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NM_000465.4(BARD1):c.1973G>A (p.Arg658His) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (3 submissions)
Last evaluated:
Dec 5, 2019
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000589126.9

Allele description [Variation Report for NM_000465.4(BARD1):c.1973G>A (p.Arg658His)]

NM_000465.4(BARD1):c.1973G>A (p.Arg658His)

Gene:
BARD1:BRCA1 associated RING domain 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q35
Genomic location:
Preferred name:
NM_000465.4(BARD1):c.1973G>A (p.Arg658His)
Other names:
NP_000456.2:p.Arg658His
HGVS:
  • NC_000002.12:g.214730439C>T
  • NG_012047.3:g.84273G>A
  • NM_000465.4:c.1973G>AMANE SELECT
  • NM_001282543.2:c.1916G>A
  • NM_001282545.2:c.620G>A
  • NM_001282548.2:c.563G>A
  • NM_001282549.2:c.434G>A
  • NP_000456.2:p.Arg658His
  • NP_001269472.1:p.Arg639His
  • NP_001269474.1:p.Arg207His
  • NP_001269477.1:p.Arg188His
  • NP_001269478.1:p.Arg145His
  • LRG_297t1:c.1973G>A
  • LRG_297:g.84273G>A
  • LRG_297p1:p.Arg658His
  • NC_000002.11:g.215595163C>T
  • NG_012047.2:g.84266G>A
  • NM_000465.2:c.1973G>A
  • NM_000465.3:c.1973G>A
  • NR_104212.2:n.1938G>A
  • NR_104215.2:n.1881G>A
  • NR_104216.2:n.1137G>A
Protein change:
R145H
Links:
dbSNP: rs377227840
NCBI 1000 Genomes Browser:
rs377227840
Molecular consequence:
  • NM_000465.4:c.1973G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282543.2:c.1916G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282545.2:c.620G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282548.2:c.563G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282549.2:c.434G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_104212.2:n.1938G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_104215.2:n.1881G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_104216.2:n.1137G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000512249GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Sep 3, 2019)
germlineclinical testing

Citation Link,

SCV001470363Quest Diagnostics Nichols Institute San Juan Capistrano
criteria provided, single submitter

(Quest Diagnostics criteria)
Uncertain significance
(Dec 5, 2019)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV004234621Revvity Omics, Revvity
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Aug 1, 2019)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From GeneDx, SCV000512249.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Has not been previously published as pathogenic or benign to our knowledge

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV001470363.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Revvity Omics, Revvity, SCV004234621.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024