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NM_058216.3(RAD51C):c.964del (p.Arg322fs) AND Hereditary cancer-predisposing syndrome

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Sep 1, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000584392.6

Allele description [Variation Report for NM_058216.3(RAD51C):c.964del (p.Arg322fs)]

NM_058216.3(RAD51C):c.964del (p.Arg322fs)

Gene:
RAD51C:RAD51 paralog C [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
17q22
Genomic location:
Preferred name:
NM_058216.3(RAD51C):c.964del (p.Arg322fs)
HGVS:
  • NC_000017.11:g.58724099del
  • NG_023199.1:g.36498del
  • NM_058216.3:c.964delMANE SELECT
  • NP_478123.1:p.Arg322fs
  • LRG_314:g.36498del
  • NC_000017.10:g.56801458del
  • NC_000017.10:g.56801460del
  • NM_058216.2:c.964del
  • NM_058216.2:c.964delA
  • NR_103872.2:n.839del
Protein change:
R322fs
Links:
dbSNP: rs1555603056
NCBI 1000 Genomes Browser:
rs1555603056
Molecular consequence:
  • NM_058216.3:c.964del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NR_103872.2:n.839del - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000691294Color Diagnostics, LLC DBA Color Health
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Sep 1, 2021)
germlineclinical testing

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Structure of the recA protein-ADP complex.

Story RM, Steitz TA.

Nature. 1992 Jan 23;355(6358):374-6.

PubMed [citation]
PMID:
1731253

Identification of functional domains in the RAD51L2 (RAD51C) protein and its requirement for gene conversion.

French CA, Tambini CE, Thacker J.

J Biol Chem. 2003 Nov 14;278(46):45445-50. Epub 2003 Sep 8.

PubMed [citation]
PMID:
12966089
See all PubMed Citations (4)

Details of each submission

From Color Diagnostics, LLC DBA Color Health, SCV000691294.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (4)

Description

This variant deletes 1 nucleotide in exon 7 of the RAD51C gene, creating a frameshift and premature translation stop signal in the last coding exon. While this mutant transcript is predicted to escape nonsense-mediated decay and be expressed as a truncated protein, it is expected to have disrupted or deleted ATPase domain (amino acid 100-347) (PMID: 1731253), RAD51 paralog binding domain (amino acid 79-376) (PMID: 14704354), and nuclear localization signal (amino acid 366-370) (PMID: 12966089). While functional studies have not been reported for this variant, cells carrying a mutant RAD51C protein without the nuclear localization signal showed increased sensitivity to a DNA cross-linking agent (PMID: 12966089). To our knowledge, this variant has not been reported in individuals affected with hereditary cancer in the literature. This variant has not been identified in the general population by the Genome Aggregation Database (gnomAD). Loss of RAD51C function is a known mechanism of disease (clinicalgenome.org). Based on the available evidence, this variant is classified as Likely Pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024