U.S. flag

An official website of the United States government

NM_002979.5(SCP2):c.825+1G>T AND Sterol carrier protein 2 deficiency

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Sep 8, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000578448.4

Allele description

NM_002979.5(SCP2):c.825+1G>T

Gene:
SCP2:sterol carrier protein 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p32.3
Genomic location:
Preferred name:
NM_002979.5(SCP2):c.825+1G>T
HGVS:
  • NC_000001.11:g.52978368G>T
  • NG_012211.1:g.56093G>T
  • NM_001007098.3:c.693+1G>T
  • NM_001193599.2:c.753+1G>T
  • NM_001193600.2:c.693+1G>T
  • NM_001193617.2:c.582+1G>T
  • NM_001330587.2:c.825+1G>T
  • NM_002979.4:c.825+1G>T
  • NM_002979.5:c.825+1G>TMANE SELECT
  • NC_000001.10:g.53444040G>T
Links:
dbSNP: rs144132787
NCBI 1000 Genomes Browser:
rs144132787
Molecular consequence:
  • NM_001007098.3:c.693+1G>T - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001193599.2:c.753+1G>T - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001193600.2:c.693+1G>T - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001193617.2:c.582+1G>T - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001330587.2:c.825+1G>T - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_002979.5:c.825+1G>T - splice donor variant - [Sequence Ontology: SO:0001575]
Observations:
1

Condition(s)

Name:
Sterol carrier protein 2 deficiency
Synonyms:
Leukoencephalopathy with dystonia and motor neuropathy
Identifiers:
MONDO: MONDO:0013391; MedGen: C3150990; Orphanet: 163684; OMIM: 613724

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000680368Institute of Human Genetics Munich, Klinikum Rechts Der Isar, TU München
criteria provided, single submitter

(Classification criteria August 2017)
Likely pathogenic
(Sep 8, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot provided1not providedclinical testing

Details of each submission

From Institute of Human Genetics Munich, Klinikum Rechts Der Isar, TU München, SCV000680368.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1bloodnot provided1not providednot providednot provided

Last Updated: May 19, 2024