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NM_002834.5(PTPN11):c.473G>C (p.Gly158Ala) AND Noonan syndrome 1

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 1, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000578106.1

Allele description [Variation Report for NM_002834.5(PTPN11):c.473G>C (p.Gly158Ala)]

NM_002834.5(PTPN11):c.473G>C (p.Gly158Ala)

Gene:
PTPN11:protein tyrosine phosphatase non-receptor type 11 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q24.13
Genomic location:
Preferred name:
NM_002834.5(PTPN11):c.473G>C (p.Gly158Ala)
HGVS:
  • NC_000012.12:g.112453335G>C
  • NG_007459.1:g.39604G>C
  • NM_001330437.2:c.473G>C
  • NM_001374625.1:c.470G>C
  • NM_002834.5:c.473G>CMANE SELECT
  • NM_080601.3:c.473G>C
  • NP_001317366.1:p.Gly158Ala
  • NP_001361554.1:p.Gly157Ala
  • NP_002825.3:p.Gly158Ala
  • NP_542168.1:p.Gly158Ala
  • LRG_614t1:c.473G>C
  • LRG_614:g.39604G>C
  • NC_000012.11:g.112891139G>C
  • NM_002834.3:c.473G>C
Protein change:
G157A
Links:
dbSNP: rs1555267825
NCBI 1000 Genomes Browser:
rs1555267825
Molecular consequence:
  • NM_001330437.2:c.473G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374625.1:c.470G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002834.5:c.473G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_080601.3:c.473G>C - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Noonan syndrome 1 (NS1)
Synonyms:
Turner Syndrome, Male; Turner phenotype with normal karyotype; Female pseudo-Turner syndrome
Identifiers:
MONDO: MONDO:0008104; MedGen: C4551602; Orphanet: 648; OMIM: 163950

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000679880Phosphorus, Inc.
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Aug 1, 2017) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Phosphorus, Inc., SCV000679880.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

Last Updated: Apr 23, 2022