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NM_201384.3(PLEC):c.11720C>T (p.Thr3907Met) AND not provided

Germline classification:
Benign (4 submissions)
Last evaluated:
Mar 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000576279.14

Allele description [Variation Report for NM_201384.3(PLEC):c.11720C>T (p.Thr3907Met)]

NM_201384.3(PLEC):c.11720C>T (p.Thr3907Met)

Gene:
PLEC:plectin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q24.3
Genomic location:
Preferred name:
NM_201384.3(PLEC):c.11720C>T (p.Thr3907Met)
HGVS:
  • NC_000008.11:g.143918101G>A
  • NG_012492.1:g.63645C>T
  • NM_000445.5:c.11801C>T
  • NM_201378.4:c.11678C>T
  • NM_201379.3:c.11654C>T
  • NM_201380.4:c.12131C>T
  • NM_201381.3:c.11624C>T
  • NM_201382.4:c.11720C>T
  • NM_201383.3:c.11732C>T
  • NM_201384.3:c.11720C>TMANE SELECT
  • NP_000436.2:p.Thr3934Met
  • NP_958780.1:p.Thr3893Met
  • NP_958781.1:p.Thr3885Met
  • NP_958782.1:p.Thr4044Met
  • NP_958783.1:p.Thr3875Met
  • NP_958784.1:p.Thr3907Met
  • NP_958785.1:p.Thr3911Met
  • NP_958786.1:p.Thr3907Met
  • NC_000008.10:g.144992269G>A
  • NM_000445.3:c.11801C>T
  • NM_000445.4:c.11801C>T
Protein change:
T3875M
Links:
dbSNP: rs78461695
NCBI 1000 Genomes Browser:
rs78461695
Molecular consequence:
  • NM_000445.5:c.11801C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_201378.4:c.11678C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_201379.3:c.11654C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_201380.4:c.12131C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_201381.3:c.11624C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_201382.4:c.11720C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_201383.3:c.11732C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_201384.3:c.11720C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
17

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000614599Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)
Benign
(Aug 29, 2018)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001739955Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus
no assertion criteria provided
Likely benigngermlineclinical testing

SCV001797507Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus
no assertion criteria provided
Likely benigngermlineclinical testing

SCV004163436CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Benign
(Mar 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes17not providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From Athena Diagnostics, SCV000614599.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus, SCV001739955.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus, SCV001797507.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV004163436.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided17not providednot providedclinical testingnot provided

Description

PLEC: BP4, BS1, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided17not providednot providednot provided

Last Updated: May 12, 2024