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NM_001370259.2(MEN1):c.1594G>T (p.Gly532Cys) AND Hereditary cancer-predisposing syndrome

Germline classification:
Conflicting interpretations of pathogenicity (2 submissions)
Last evaluated:
May 4, 2022
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000572942.8

Allele description [Variation Report for NM_001370259.2(MEN1):c.1594G>T (p.Gly532Cys)]

NM_001370259.2(MEN1):c.1594G>T (p.Gly532Cys)

Gene:
MEN1:menin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q13.1
Genomic location:
Preferred name:
NM_001370259.2(MEN1):c.1594G>T (p.Gly532Cys)
HGVS:
  • NC_000011.10:g.64804573C>A
  • NG_008929.1:g.11722G>T
  • NG_033040.1:g.3669G>T
  • NM_000244.3:c.1609G>T
  • NM_000244.4:c.1609G>T
  • NM_001370251.2:c.1720G>T
  • NM_001370259.2:c.1594G>TMANE SELECT
  • NM_001370260.2:c.1594G>T
  • NM_001370261.2:c.1594G>T
  • NM_001370262.2:c.1489G>T
  • NM_001370263.2:c.1489G>T
  • NM_130799.3:c.1594G>T
  • NM_130800.3:c.1609G>T
  • NM_130801.3:c.1609G>T
  • NM_130802.3:c.1609G>T
  • NM_130803.3:c.1609G>T
  • NM_130804.3:c.1609G>T
  • NP_000235.3:p.Gly537Cys
  • NP_001357180.2:p.Gly574Cys
  • NP_001357188.2:p.Gly532Cys
  • NP_001357189.2:p.Gly532Cys
  • NP_001357190.2:p.Gly532Cys
  • NP_001357191.2:p.Gly497Cys
  • NP_001357192.2:p.Gly497Cys
  • NP_570711.1:p.Gly532Cys
  • NP_570711.2:p.Gly532Cys
  • NP_570712.2:p.Gly537Cys
  • NP_570713.2:p.Gly537Cys
  • NP_570714.2:p.Gly537Cys
  • NP_570715.2:p.Gly537Cys
  • NP_570716.2:p.Gly537Cys
  • LRG_509t1:c.1609G>T
  • LRG_509t2:c.1594G>T
  • LRG_509:g.11722G>T
  • LRG_509p2:p.Gly532Cys
  • NC_000011.9:g.64572045C>A
  • NM_130799.2:c.1594G>T
Protein change:
G497C
Links:
dbSNP: rs587780843
NCBI 1000 Genomes Browser:
rs587780843
Molecular consequence:
  • NM_000244.4:c.1609G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370251.2:c.1720G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370259.2:c.1594G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370260.2:c.1594G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370261.2:c.1594G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370262.2:c.1489G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370263.2:c.1489G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130799.3:c.1594G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130800.3:c.1609G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130801.3:c.1609G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130802.3:c.1609G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130803.3:c.1609G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130804.3:c.1609G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000673642Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(May 4, 2022) 		germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Citation Link,

SCV002530058Sema4, Sema4
criteria provided, single submitter

(Sema4 Curation Guidelines)		Uncertain significance
(Nov 4, 2021) 		germlinecuration

PubMed (2)
[See all records that cite these PMIDs]

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing, curation

Citations

PubMed

Pituitary disease in MEN type 1 (MEN1): data from the France-Belgium MEN1 multicenter study.

Vergès B, Boureille F, Goudet P, Murat A, Beckers A, Sassolas G, Cougard P, Chambe B, Montvernay C, Calender A.

J Clin Endocrinol Metab. 2002 Feb;87(2):457-65.

PubMed [citation]
PMID:
11836268

Germline mutation profile of MEN1 in multiple endocrine neoplasia type 1: search for correlation between phenotype and the functional domains of the MEN1 protein.

Wautot V, Vercherat C, Lespinasse J, Chambe B, Lenoir GM, Zhang CX, Porchet N, Cordier M, Béroud C, Calender A.

Hum Mutat. 2002 Jul;20(1):35-47.

PubMed [citation]
PMID:
12112656

Details of each submission

From Ambry Genetics, SCV000673642.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Sema4, Sema4, SCV002530058.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcuration PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024