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NM_004360.5(CDH1):c.293T>A (p.Phe98Tyr) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 10, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000572193.3

Allele description [Variation Report for NM_004360.5(CDH1):c.293T>A (p.Phe98Tyr)]

NM_004360.5(CDH1):c.293T>A (p.Phe98Tyr)

Gene:
CDH1:cadherin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q22.1
Genomic location:
Preferred name:
NM_004360.5(CDH1):c.293T>A (p.Phe98Tyr)
HGVS:
  • NC_000016.10:g.68801799T>A
  • NG_008021.1:g.69508T>A
  • NM_001317184.2:c.293T>A
  • NM_001317185.2:c.-1323T>A
  • NM_001317186.2:c.-1527T>A
  • NM_004360.5:c.293T>AMANE SELECT
  • NP_001304113.1:p.Phe98Tyr
  • NP_004351.1:p.Phe98Tyr
  • LRG_301t1:c.293T>A
  • LRG_301:g.69508T>A
  • NC_000016.9:g.68835702T>A
  • NM_004360.3:c.293T>A
Protein change:
F98Y
Links:
dbSNP: rs1555514451
NCBI 1000 Genomes Browser:
rs1555514451
Molecular consequence:
  • NM_001317185.2:c.-1323T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001317186.2:c.-1527T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001317184.2:c.293T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004360.5:c.293T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000669055Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Dec 10, 2021) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV000669055.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.F98Y variant (also known as c.293T>A), located in coding exon 3 of the CDH1 gene, results from a T to A substitution at nucleotide position 293. The phenylalanine at codon 98 is replaced by tyrosine, an amino acid with highly similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024