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NM_000179.3(MSH6):c.2413A>T (p.Ile805Phe) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Apr 21, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000571872.6

Allele description [Variation Report for NM_000179.3(MSH6):c.2413A>T (p.Ile805Phe)]

NM_000179.3(MSH6):c.2413A>T (p.Ile805Phe)

Gene:
MSH6:mutS homolog 6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p16.3
Genomic location:
Preferred name:
NM_000179.3(MSH6):c.2413A>T (p.Ile805Phe)
HGVS:
  • NC_000002.12:g.47800396A>T
  • NG_007111.1:g.22250A>T
  • NM_000179.3:c.2413A>TMANE SELECT
  • NM_001281492.2:c.2023A>T
  • NM_001281493.2:c.1507A>T
  • NM_001281494.2:c.1507A>T
  • NP_000170.1:p.Ile805Phe
  • NP_000170.1:p.Ile805Phe
  • NP_001268421.1:p.Ile675Phe
  • NP_001268422.1:p.Ile503Phe
  • NP_001268423.1:p.Ile503Phe
  • LRG_219t1:c.2413A>T
  • LRG_219:g.22250A>T
  • LRG_219p1:p.Ile805Phe
  • NC_000002.11:g.48027535A>T
  • NM_000179.2:c.2413A>T
Protein change:
I503F
Links:
dbSNP: rs928923556
NCBI 1000 Genomes Browser:
rs928923556
Molecular consequence:
  • NM_000179.3:c.2413A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001281492.2:c.2023A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001281493.2:c.1507A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001281494.2:c.1507A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000670077Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Apr 21, 2023) 		germlineclinical testing

Citation Link,

SCV002535736Sema4, Sema4
criteria provided, single submitter

(Sema4 Curation Guidelines)		Uncertain significance
(May 4, 2021) 		germlinecuration

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing, curation

Details of each submission

From Ambry Genetics, SCV000670077.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.I805F variant (also known as c.2413A>T), located in coding exon 4 of the MSH6 gene, results from an A to T substitution at nucleotide position 2413. The isoleucine at codon 805 is replaced by phenylalanine, an amino acid with highly similar properties. This amino acid position is poorly conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Sema4, Sema4, SCV002535736.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcurationnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024