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NM_000535.7(PMS2):c.1094G>T (p.Ser365Ile) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 3, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000569526.4

Allele description [Variation Report for NM_000535.7(PMS2):c.1094G>T (p.Ser365Ile)]

NM_000535.7(PMS2):c.1094G>T (p.Ser365Ile)

Gene:
PMS2:PMS1 homolog 2, mismatch repair system component [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7p22.1
Genomic location:
Preferred name:
NM_000535.7(PMS2):c.1094G>T (p.Ser365Ile)
HGVS:
  • NC_000007.14:g.5989850C>A
  • NG_008466.1:g.24257G>T
  • NM_000535.7:c.1094G>TMANE SELECT
  • NM_001322003.2:c.689G>T
  • NM_001322004.2:c.689G>T
  • NM_001322005.2:c.689G>T
  • NM_001322006.2:c.988+2123G>T
  • NM_001322007.2:c.776G>T
  • NM_001322008.2:c.776G>T
  • NM_001322009.2:c.689G>T
  • NM_001322010.2:c.583+2123G>T
  • NM_001322011.2:c.161G>T
  • NM_001322012.2:c.161G>T
  • NM_001322013.2:c.521G>T
  • NM_001322014.2:c.1094G>T
  • NM_001322015.2:c.785G>T
  • NP_000526.2:p.Ser365Ile
  • NP_001308932.1:p.Ser230Ile
  • NP_001308933.1:p.Ser230Ile
  • NP_001308934.1:p.Ser230Ile
  • NP_001308936.1:p.Ser259Ile
  • NP_001308937.1:p.Ser259Ile
  • NP_001308938.1:p.Ser230Ile
  • NP_001308940.1:p.Ser54Ile
  • NP_001308941.1:p.Ser54Ile
  • NP_001308942.1:p.Ser174Ile
  • NP_001308943.1:p.Ser365Ile
  • NP_001308944.1:p.Ser262Ile
  • LRG_161t1:c.1094G>T
  • LRG_161:g.24257G>T
  • NC_000007.13:g.6029481C>A
  • NM_000535.5:c.1094G>T
  • NR_136154.1:n.1181G>T
Protein change:
S174I
Links:
dbSNP: rs1554298690
NCBI 1000 Genomes Browser:
rs1554298690
Molecular consequence:
  • NM_001322006.2:c.988+2123G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322010.2:c.583+2123G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000535.7:c.1094G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322003.2:c.689G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322004.2:c.689G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322005.2:c.689G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322007.2:c.776G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322008.2:c.776G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322009.2:c.689G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322011.2:c.161G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322012.2:c.161G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322013.2:c.521G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322014.2:c.1094G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322015.2:c.785G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_136154.1:n.1181G>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000676189Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Jan 3, 2023) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV000676189.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.S365I variant (also known as c.1094G>T), located in coding exon 10 of the PMS2 gene, results from a G to T substitution at nucleotide position 1094. The serine at codon 365 is replaced by isoleucine, an amino acid with dissimilar properties. This amino acid position is poorly conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024