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NM_000527.5(LDLR):c.337G>T (p.Glu113Ter) AND not provided

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Jan 5, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000523979.4

Allele description [Variation Report for NM_000527.5(LDLR):c.337G>T (p.Glu113Ter)]

NM_000527.5(LDLR):c.337G>T (p.Glu113Ter)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.337G>T (p.Glu113Ter)
Other names:
FH Paris-5; NP_000518.1:p.E113*
HGVS:
  • NC_000019.10:g.11105243G>T
  • NG_009060.1:g.20863G>T
  • NM_000527.5:c.337G>TMANE SELECT
  • NM_001195798.2:c.337G>T
  • NM_001195799.2:c.214G>T
  • NM_001195800.2:c.314-2149G>T
  • NM_001195803.2:c.314-1322G>T
  • NP_000518.1:p.Glu113Ter
  • NP_000518.1:p.Glu113Ter
  • NP_001182727.1:p.Glu113Ter
  • NP_001182728.1:p.Glu72Ter
  • LRG_274t1:c.337G>T
  • LRG_274:g.20863G>T
  • LRG_274p1:p.Glu113Ter
  • NC_000019.9:g.11215919G>T
  • NM_000527.4:c.337G>T
  • c.337G>T
  • p.(Glu113*)
  • p.Glu113*
Protein change:
E113*
Links:
LDLR-LOVD, British Heart Foundation: LDLR_001705;
Molecular consequence:
  • NM_001195800.2:c.314-2149G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195803.2:c.314-1322G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000527.5:c.337G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001195798.2:c.337G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001195799.2:c.214G>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000617502GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Pathogenic
(Jan 5, 2024)
germlineclinical testing

Citation Link,

SCV005198644Clinical Genetics Laboratory, Skane University Hospital Lund
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Jul 13, 2022)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From GeneDx, SCV000617502.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Has been reported in multiple unrelated individuals with FH (PMID: 28502510, 1301956, 27765764, 32041611, 33303402, 34037665, 34297352, 31345425, 11933210, 35052492, 11462246, 11196104); Not observed at significant frequency in large population cohorts (gnomAD); Nonsense variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss of function is a known mechanism of disease; Also known as E92X and FH Paris-5; This variant is associated with the following publications: (PMID: 25525159, 1301956, 32041611, 28502510, 33303402, 34297352, 33955087, 26894473, 27765764, 34037665, 31345425, 11933210, 35052492, 11462246, 11196104, 10532689, 10066037, 37128917)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics Laboratory, Skane University Hospital Lund, SCV005198644.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024