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NM_024301.5(FKRP):c.957_958delinsAA (p.Arg320Ser) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 7, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000523958.1

Allele description [Variation Report for NM_024301.5(FKRP):c.957_958delinsAA (p.Arg320Ser)]

NM_024301.5(FKRP):c.957_958delinsAA (p.Arg320Ser)

Gene:
FKRP:fukutin related protein [Gene - OMIM - HGNC]
Variant type:
Indel
Cytogenetic location:
19q13.32
Genomic location:
Preferred name:
NM_024301.5(FKRP):c.957_958delinsAA (p.Arg320Ser)
HGVS:
  • NC_000019.10:g.46756407_46756408delinsAA
  • NG_008898.2:g.15362_15363delinsAA
  • NM_001039885.3:c.957_958delinsAA
  • NM_024301.5:c.957_958delinsAAMANE SELECT
  • NP_001034974.1:p.Arg320Ser
  • NP_077277.1:p.Arg320Ser
  • LRG_761t1:c.957_958delinsAA
  • LRG_761:g.15362_15363delinsAA
  • LRG_761p1:p.Arg320Ser
  • NC_000019.9:g.47259664_47259665delinsAA
  • NM_024301.4:c.957_958delGCinsAA
Protein change:
R320S
Links:
dbSNP: rs1555738880
NCBI 1000 Genomes Browser:
rs1555738880
Molecular consequence:
  • NM_001039885.3:c.957_958delinsAA - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024301.5:c.957_958delinsAA - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000617896GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Dec 7, 2015)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000617896.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

A variant of uncertain significance has been identified in the FKRP gene. The c.957_958delGCinsAA variant has not been published as a pathogenic variant, nor has it been reported as a benign variant to our knowledge. It was not observed in approximately 5,600 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The c.957_958delGCinsAA variant is caused by two nucleotide substitutions (c.957 G>A and c.958 C>A) on the same allele (in cis), resulting in an in-frame deletion of a single Arginine residue and the insertion of a single Serine residue at amino acid position 320, denoted R320S. The R320S variant is a semi-conservative amino acid substitution, which may impact secondary protein structure as these residues differ in some properties. However, this substitution occurs at a position that is not conserved. In silico analysis is inconsistent in its predictions as to whether or not the variant is damaging to the protein structure/function. Therefore, based on the currently available information, it is unclear whether this variant is a pathogenic variant or a rare benign variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022