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NM_001376.5(DYNC1H1):c.1013A>G (p.Asp338Gly) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Oct 23, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000519746.1

Allele description [Variation Report for NM_001376.5(DYNC1H1):c.1013A>G (p.Asp338Gly)]

NM_001376.5(DYNC1H1):c.1013A>G (p.Asp338Gly)

Gene:
DYNC1H1:dynein cytoplasmic 1 heavy chain 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q32.31
Genomic location:
Preferred name:
NM_001376.5(DYNC1H1):c.1013A>G (p.Asp338Gly)
HGVS:
  • NC_000014.9:g.101983070A>G
  • NG_008777.1:g.23543A>G
  • NM_001376.5:c.1013A>GMANE SELECT
  • NP_001367.2:p.Asp338Gly
  • NC_000014.8:g.102449407A>G
  • NM_001376.4:c.1013A>G
Protein change:
D338G
Links:
dbSNP: rs879254267
NCBI 1000 Genomes Browser:
rs879254267
Molecular consequence:
  • NM_001376.5:c.1013A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000621741GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Likely pathogenic
(Oct 23, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000621741.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The D338G variant has not been published as a pathogenic variant, nor has it been reported as a benign variant to our knowledge. However, a different missense variant at the same position (D338N) has been reported in an individual with lower and upper extremity weakness, muscle atrophy, talipes, and arthrogryposis (Scoto et al., 2015). Additionally, another missense variant at the same position (D338V) has been reported as a de novo variant in an individual with lower extremity weakness previously tested at GeneDx. The D338G variant is not observed in large population cohorts (Lek et al., 2016). This variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. This substitution occurs at a conserved position within the dimerization domain of the DYNC1H1 protein. In silico analysis predicts this variant is probably damaging to the protein structure/function.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022