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NM_001134831.2(AHI1):c.1912+5G>T AND Leber congenital amaurosis

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 9, 2017
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000515724.1

Allele description [Variation Report for NM_001134831.2(AHI1):c.1912+5G>T]

NM_001134831.2(AHI1):c.1912+5G>T

Gene:
AHI1:Abelson helper integration site 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6q23.3
Genomic location:
Preferred name:
NM_001134831.2(AHI1):c.1912+5G>T
HGVS:
  • NC_000006.12:g.135442577C>A
  • NG_008643.2:g.60189G>T
  • NM_001134830.2:c.1912+5G>T
  • NM_001134831.2:c.1912+5G>TMANE SELECT
  • NM_001134832.2:c.1912+5G>T
  • NM_001350503.2:c.1912+5G>T
  • NM_001350504.2:c.1912+5G>T
  • NM_017651.5:c.1912+5G>T
  • NC_000006.11:g.135763715C>A
Links:
dbSNP: rs1554347012
NCBI 1000 Genomes Browser:
rs1554347012
Molecular consequence:
  • NM_001134830.2:c.1912+5G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001134831.2:c.1912+5G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001134832.2:c.1912+5G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001350503.2:c.1912+5G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001350504.2:c.1912+5G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_017651.5:c.1912+5G>T - intron variant - [Sequence Ontology: SO:0001627]
Functional consequence:
sequence_variant_affecting_splicing [Sequence Ontology: SO:1000071]

Condition(s)

Name:
Leber congenital amaurosis (LCA)
Synonyms:
Congenital retinal blindness; Leber's amaurosis
Identifiers:
MONDO: MONDO:0018998; MeSH: D057130; MedGen: C0339527; OMIM: PS204000

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000579410Rui Chen Lab, Baylor College of Medicine
no assertion criteria provided
Pathogenic
(May 9, 2017)
germlineresearch

Description

An in vitrominigene system was used to confirm that the variant disrupts splicing

SCV000579410

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedresearch

Details of each submission

From Rui Chen Lab, Baylor College of Medicine, SCV000579410.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022