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NM_021625.5(TRPV4):c.2518G>A (p.Glu840Lys) AND not provided

Germline classification:
Benign/Likely benign (4 submissions)
Last evaluated:
Jul 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000515055.36

Allele description [Variation Report for NM_021625.5(TRPV4):c.2518G>A (p.Glu840Lys)]

NM_021625.5(TRPV4):c.2518G>A (p.Glu840Lys)

Gene:
TRPV4:transient receptor potential cation channel subfamily V member 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q24.11
Genomic location:
Preferred name:
NM_021625.5(TRPV4):c.2518G>A (p.Glu840Lys)
Other names:
p.E840K:GAG>AAG
HGVS:
  • NC_000012.12:g.109783719C>T
  • NG_017090.1:g.54689G>A
  • NM_001177428.1:c.2377G>A
  • NM_001177431.1:c.2416G>A
  • NM_001177433.1:c.2197G>A
  • NM_021625.5:c.2518G>AMANE SELECT
  • NM_147204.2:c.2338G>A
  • NP_001170899.1:p.Glu793Lys
  • NP_001170902.1:p.Glu806Lys
  • NP_001170904.1:p.Glu733Lys
  • NP_067638.3:p.Glu840Lys
  • NP_067638.3:p.Glu840Lys
  • NP_671737.1:p.Glu780Lys
  • LRG_372t1:c.2518G>A
  • LRG_372:g.54689G>A
  • LRG_372p1:p.Glu840Lys
  • NC_000012.11:g.110221524C>T
  • NM_021625.4:c.2518G>A
Protein change:
E733K
Links:
dbSNP: rs55728855
NCBI 1000 Genomes Browser:
rs55728855
Molecular consequence:
  • NM_001177428.1:c.2377G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001177431.1:c.2416G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001177433.1:c.2197G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_021625.5:c.2518G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_147204.2:c.2338G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
27

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000605455ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process 2024)
Benign
(Sep 18, 2023)
germlineclinical testing

Citation Link,

SCV000610043Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely benign
(Jun 15, 2017)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001979790Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV002545061CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Benign
(Jul 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlineyes27not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV000605455.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics, SCV000610043.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot provided0.008407not providednot provided

From Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus, SCV001979790.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV002545061.16

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided27not providednot providedclinical testingnot provided

Description

TRPV4: BP4, BS1, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided27not providednot providednot provided

Last Updated: Nov 10, 2024