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NM_000527.5(LDLR):c.408C>T (p.Asp136=) AND Hypercholesterolemia, familial, 1

Germline classification:
Likely benign (3 submissions)
Last evaluated:
Jan 11, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000508857.4

Allele description [Variation Report for NM_000527.5(LDLR):c.408C>T (p.Asp136=)]

NM_000527.5(LDLR):c.408C>T (p.Asp136=)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.408C>T (p.Asp136=)
HGVS:
  • NC_000019.10:g.11105314C>T
  • NG_009060.1:g.20934C>T
  • NM_000527.5:c.408C>TMANE SELECT
  • NM_001195798.2:c.408C>T
  • NM_001195799.2:c.285C>T
  • NM_001195800.2:c.314-2078C>T
  • NM_001195803.2:c.314-1251C>T
  • NP_000518.1:p.Asp136=
  • NP_000518.1:p.Asp136=
  • NP_001182727.1:p.Asp136=
  • NP_001182728.1:p.Asp95=
  • LRG_274t1:c.408C>T
  • LRG_274:g.20934C>T
  • LRG_274p1:p.Asp136=
  • NC_000019.9:g.11215990C>T
  • NM_000527.4:c.408C>T
Links:
dbSNP: rs759738744
NCBI 1000 Genomes Browser:
rs759738744
Molecular consequence:
  • NM_001195800.2:c.314-2078C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195803.2:c.314-1251C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000527.5:c.408C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001195798.2:c.408C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001195799.2:c.285C>T - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
10

Condition(s)

Name:
Hypercholesterolemia, familial, 1
Synonyms:
LDL RECEPTOR DISORDER; Hyperlipoproteinemia Type IIa; HYPER-LOW-DENSITY-LIPOPROTEINEMIA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007750; MedGen: C0745103; Orphanet: 391665; OMIM: 143890

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000606107Laboratorium voor Moleculaire Diagnostiek Experimentele Vasculaire Geneeskunde, Academisch Medisch Centrum
no assertion criteria provided
Benigngermlineresearch

SCV002807202Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely benign
(Sep 14, 2021)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV004820163All of Us Research Program, National Institutes of Health
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely Benign
(Jan 11, 2024)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown10not providednot provided108544not providedclinical testing, research
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Laboratorium voor Moleculaire Diagnostiek Experimentele Vasculaire Geneeskunde, Academisch Medisch Centrum, SCV000606107.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Fulgent Genetics, Fulgent Genetics, SCV002807202.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From All of Us Research Program, National Institutes of Health, SCV004820163.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided10not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknown108544not providednot provided10not providednot providednot provided

Last Updated: Sep 29, 2024