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NM_000527.5(LDLR):c.2140+1_2140+12del AND Hypercholesterolemia, familial, 1

Germline classification:
Pathogenic (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000508842.1

Allele description [Variation Report for NM_000527.5(LDLR):c.2140+1_2140+12del]

NM_000527.5(LDLR):c.2140+1_2140+12del

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.2140+1_2140+12del
HGVS:
  • NC_000019.10:g.11120523_11120534del
  • NG_009060.1:g.36143_36154del
  • NM_000527.5:c.2140+1_2140+12delMANE SELECT
  • NM_001195798.2:c.2140+1_2140+12del
  • NM_001195799.2:c.2017+1_2017+12del
  • NM_001195800.2:c.1636+1_1636+12del
  • NM_001195803.2:c.1606+290_1606+301del
  • LRG_274t1:c.2140+1_2140+12del
  • LRG_274:g.36143_36154del
  • NC_000019.9:g.11231199_11231210del
  • NM_000527.4:c.2140+1_2140+12del
Links:
dbSNP: rs1555807475
NCBI 1000 Genomes Browser:
rs1555807475
Molecular consequence:
  • NM_001195803.2:c.1606+290_1606+301del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000527.5:c.2140+1_2140+12del - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001195798.2:c.2140+1_2140+12del - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001195799.2:c.2017+1_2017+12del - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001195800.2:c.1636+1_1636+12del - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Name:
Hypercholesterolemia, familial, 1
Synonyms:
LDL RECEPTOR DISORDER; Hyperlipoproteinemia Type IIa; HYPER-LOW-DENSITY-LIPOPROTEINEMIA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007750; MedGen: C0745103; Orphanet: 391665; OMIM: 143890

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000606608Laboratorium voor Moleculaire Diagnostiek Experimentele Vasculaire Geneeskunde, Academisch Medisch Centrum
no assertion criteria provided
Pathogenicgermlineresearch

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedresearch

Details of each submission

From Laboratorium voor Moleculaire Diagnostiek Experimentele Vasculaire Geneeskunde, Academisch Medisch Centrum, SCV000606608.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 5, 2023