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NM_000132.4(F8):c.1601T>C (p.Val534Ala) AND not specified

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Mar 8, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000507498.10

Allele description [Variation Report for NM_000132.4(F8):c.1601T>C (p.Val534Ala)]

NM_000132.4(F8):c.1601T>C (p.Val534Ala)

Gene:
F8:coagulation factor VIII [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_000132.4(F8):c.1601T>C (p.Val534Ala)
HGVS:
  • NC_000023.11:g.154957108A>G
  • NG_011403.2:g.70616T>C
  • NM_000132.4:c.1601T>CMANE SELECT
  • NP_000123.1:p.Val534Ala
  • NP_000123.1:p.Val534Ala
  • LRG_555t1:c.1601T>C
  • LRG_555:g.70616T>C
  • LRG_555p1:p.Val534Ala
  • NC_000023.10:g.154185383A>G
  • NG_011403.1:g.70616T>C
  • NM_000132.3:c.1601T>C
Protein change:
V534A
Links:
dbSNP: rs1557281261
NCBI 1000 Genomes Browser:
rs1557281261
Molecular consequence:
  • NM_000132.4:c.1601T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000603522ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process)
Uncertain significance
(Nov 23, 2016)
germlineclinical testing

Citation Link,

SCV005039950Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Mar 8, 2024)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Novel F8 and F9 gene variants from the PedNet hemophilia registry classified according to ACMG/AMP guidelines.

Andersson NG, Labarque V, Letelier A, Mancuso ME, Bührlen M, Fischer K, Kartal-Kaess M, Koskenvuo M, Mikkelsen T, Ljung R; PedNet study group..

Hum Mutat. 2020 Dec;41(12):2058-2072. doi: 10.1002/humu.24117. Epub 2020 Oct 14.

PubMed [citation]
PMID:
32935414
PMCID:
PMC7756260

Details of each submission

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV000603522.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV005039950.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

Variant summary: F8 c.1601T>C (p.Val534Ala) results in a non-conservative amino acid change located in the Multicopper oxidase-like, N-terminal domain (IPR011707) of the encoded protein sequence. Five of five in-silico tools predict a damaging effect of the variant on protein function. The variant was absent in 183421 control chromosomes. The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. c.1601T>C has been reported in the literature as as a mild variant listed in the PedNet Registry of individuals affected with Factor VIII Deficiency (Hemophilia A) (Andersson_2020). These data do not allow any conclusion about variant significance. To our knowledge, no primary experimental evidence demonstrating an impact on protein function has been reported although the publication cited above lists reports a FVIII activity of 7% and a clinical significance of a mild class 5 category (Pathogenic). The following publication have been ascertained in the context of this evaluation (PMID: 32935414). ClinVar contains an entry for this variant (Variation ID: 439681). Based on the evidence outlined above, the variant was classified as uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 7, 2024