NM_000094.4(COL7A1):c.5425-1G>C AND not provided

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Feb 12, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000498061.2

Allele description [Variation Report for NM_000094.4(COL7A1):c.5425-1G>C]

NM_000094.4(COL7A1):c.5425-1G>C

Gene:

COL7A1:collagen type VII alpha 1 chain [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p21.31

Genomic location:

Preferred name:

NM_000094.4(COL7A1):c.5425-1G>C

HGVS:

NC_000003.12:g.48578516C>G
NG_007065.1:g.21737G>C
NM_000094.4:c.5425-1G>CMANE SELECT
LRG_286t1:c.5425-1G>C
LRG_286:g.21737G>C
NC_000003.11:g.48615949C>G
NM_000094.3:c.5425-1G>C

Links:

dbSNP: rs112850769

NCBI 1000 Genomes Browser:

rs112850769

Molecular consequence:

NM_000094.4:c.5425-1G>C - splice acceptor variant - [Sequence Ontology: SO:0001574]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Agononida procera 28S ribosomal RNA gene, partial sequence
Agononida procera 28S ribosomal RNA gene, partial sequence
gi|193878396|gb|EU821573.1|

Nucleotide
Homo sapiens family with sequence similarity 185 member A (FAM185A), transcript ...
Homo sapiens family with sequence similarity 185 member A (FAM185A), transcript variant 7, non-coding RNA
gi|1890529627|ref|NR_146978.2|

Nucleotide
Chain A, Ran-binding protein 9
Chain A, Ran-binding protein 9
gi|1101273536|pdb|5JIU|A

Protein
Lymphatic System
Lymphatic System
A system of organs and tissues that process and transport immune cells and LYMPH.<br/>

MeSH
Eccrine Glands
Eccrine Glands
Simple sweat glands that secrete sweat directly onto the SKIN.<br/>Year introduced: 1991(1975)

MeSH

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000590082	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Pathogenic (Feb 12, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000590082

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Pathogenic
(Feb 12, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV000590082.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Canonical splice site variant predicted to result in a null allele in a gene for which loss of function is a known mechanism of disease; Not observed at significant frequency in large population cohorts (gnomAD); Has not been previously published as pathogenic or benign to our knowledge

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Jul 23, 2024

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