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NM_000138.5(FBN1):c.3761G>A (p.Cys1254Tyr) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Apr 15, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000494514.1

Allele description [Variation Report for NM_000138.5(FBN1):c.3761G>A (p.Cys1254Tyr)]

NM_000138.5(FBN1):c.3761G>A (p.Cys1254Tyr)

Gene:
FBN1:fibrillin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q21.1
Genomic location:
Preferred name:
NM_000138.5(FBN1):c.3761G>A (p.Cys1254Tyr)
HGVS:
  • NC_000015.10:g.48483895C>T
  • NG_008805.2:g.166894G>A
  • NM_000138.5:c.3761G>AMANE SELECT
  • NP_000129.3:p.Cys1254Tyr
  • NP_000129.3:p.Cys1254Tyr
  • LRG_778t1:c.3761G>A
  • LRG_778:g.166894G>A
  • LRG_778p1:p.Cys1254Tyr
  • NC_000015.9:g.48776092C>T
  • NM_000138.4:c.3761G>A
Protein change:
C1254Y
Links:
dbSNP: rs1131691805
NCBI 1000 Genomes Browser:
rs1131691805
Molecular consequence:
  • NM_000138.5:c.3761G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000582881GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Likely pathogenic
(Apr 15, 2016)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000582881.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The C1254Y variant has been reported previously as de novo in at least one individual with Furlong syndrome (Marfanoid-habitus craniosynostosis syndrome) (Stheneur et al., 2009; Carmignac et al., 2012). The C1254Y variant was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The C1254Y variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. Additionally, this substitution occurs at a position that is conserved across species and in silico analysis predicts this variant is probably damaging to the protein structure/function. Furthermore, the C1254Y variant affects a Cysteine residue within a calcium-binding EGF-like domain of the FBN1 gene, which may affect disulfide bonding and is predicted to alter the structure and function of the protein. Cysteine substitutions in the calcium-binding EGF-like domains represent the majority of pathogenic missense changes associated with Marfan syndrome (Collod-Beroud et al., 2003).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 5, 2022