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NM_001122955.4(BSCL2):c.62A>T (p.Gln21Leu) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 12, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000493815.3

Allele description [Variation Report for NM_001122955.4(BSCL2):c.62A>T (p.Gln21Leu)]

NM_001122955.4(BSCL2):c.62A>T (p.Gln21Leu)

Genes:
BSCL2:BSCL2 lipid droplet biogenesis associated, seipin [Gene - OMIM - HGNC]
GNG3:G protein subunit gamma 3 [Gene - OMIM - HGNC]
HNRNPUL2-BSCL2:HNRNPUL2-BSCL2 readthrough (NMD candidate) [Gene - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q12.3
Genomic location:
Preferred name:
NM_001122955.4(BSCL2):c.62A>T (p.Gln21Leu)
HGVS:
  • NC_000011.10:g.62707134T>A
  • NG_008461.1:g.7441A>T
  • NM_001122955.4:c.62A>TMANE SELECT
  • NM_001386027.1:c.62A>T
  • NM_001386028.1:c.62A>T
  • NM_032667.6:c.-1037A>T
  • NP_001116427.1:p.Gln21Leu
  • NP_001372956.1:p.Gln21Leu
  • NP_001372957.1:p.Gln21Leu
  • LRG_235t2:c.-1037A>T
  • LRG_235:g.7441A>T
  • NC_000011.9:g.62474606T>A
  • NM_001122955.3:c.62A>T
  • NR_037946.1:n.2582A>T
Protein change:
Q21L
Links:
dbSNP: rs1006065298
NCBI 1000 Genomes Browser:
rs1006065298
Molecular consequence:
  • NM_032667.6:c.-1037A>T - genic upstream transcript variant - [Sequence Ontology: SO:0002153]
  • NM_001122955.4:c.62A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001386027.1:c.62A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001386028.1:c.62A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_037946.1:n.2582A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000582545GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Feb 12, 2021)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000582545.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at a significant frequency in large population cohorts (Lek et al., 2016); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 27144933)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 21, 2023