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NM_000551.4(VHL):c.233A>G (p.Asn78Ser) AND Hereditary cancer-predisposing syndrome

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 2, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000492165.12

Allele description [Variation Report for NM_000551.4(VHL):c.233A>G (p.Asn78Ser)]

NM_000551.4(VHL):c.233A>G (p.Asn78Ser)

Gene:
VHL:von Hippel-Lindau tumor suppressor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p25.3
Genomic location:
Preferred name:
NM_000551.4(VHL):c.233A>G (p.Asn78Ser)
Other names:
NM_000551.4(VHL):c.233A>G
HGVS:
  • NC_000003.12:g.10142080A>G
  • NG_008212.3:g.5446A>G
  • NM_000551.4:c.233A>GMANE SELECT
  • NM_001354723.2:c.233A>G
  • NM_198156.3:c.233A>G
  • NP_000542.1:p.Asn78Ser
  • NP_000542.1:p.Asn78Ser
  • NP_001341652.1:p.Asn78Ser
  • NP_937799.1:p.Asn78Ser
  • LRG_322t1:c.233A>G
  • LRG_322:g.5446A>G
  • LRG_322p1:p.Asn78Ser
  • NC_000003.11:g.10183764A>G
  • NM_000551.3:c.233A>G
  • P40337:p.Asn78Ser
  • p.[Asn78Ser]
Protein change:
N78S
Links:
UniProtKB: P40337#VAR_005683; dbSNP: rs5030804
NCBI 1000 Genomes Browser:
rs5030804
Molecular consequence:
  • NM_000551.4:c.233A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354723.2:c.233A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198156.3:c.233A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000580971Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Pathogenic
(Sep 2, 2021)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Genotype-phenotype analysis of von Hippel-Lindau syndrome in Korean families: HIF-α binding site missense mutations elevate age-specific risk for CNS hemangioblastoma.

Lee JS, Lee JH, Lee KE, Kim JH, Hong JM, Ra EK, Seo SH, Lee SJ, Kim MJ, Park SS, Seong MW.

BMC Med Genet. 2016 Jul 20;17(1):48. doi: 10.1186/s12881-016-0306-2.

PubMed [citation]
PMID:
27439424
PMCID:
PMC4955248

Clinical and molecular characteristics of East Asian patients with von Hippel-Lindau syndrome.

Wong M, Chu YH, Tan HL, Bessho H, Ngeow J, Tang T, Tan MH.

Chin J Cancer. 2016 Aug 15;35(1):79. doi: 10.1186/s40880-016-0141-z.

PubMed [citation]
PMID:
27527340
PMCID:
PMC4986176

Details of each submission

From Ambry Genetics, SCV000580971.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)

Description

The p.N78S pathogenic mutation (also known as c.233A>G) is located in coding exon 1 of the VHL gene and results from an A to G substitution at nucleotide position 233. The asparagine at codon 78 is replaced by serine, an amino acid with highly similar properties. This mutation has been reported in multiple individuals and families with VHL and has been shown to co-segregate with disease (Chen et al. Hum Mut. 1995; 5(1): 66-75; Zbar et al. Hum Mut. 1996 8:348-357; Cybulski et al. J Med Genet. 2002 Jul;39(7):E38; Zhang et al. J Cancer Res Clin Oncol. 2008 Nov;134(11):1211-8; Siu et al. Chin Med J (Engl). 2011 Jan;124(2):237-41; Lee JS et al. BMC Med. Genet. 2016 07;17(1):48; Cingoz S et al. Fam Cancer 2013 Mar;12(1):111-7; Lin G et al. Exp Ther Med 2020 Aug;20(2):1237-1244; Qi XP et al. Mol Med Rep 2013 Sep;8(3):799-805). In one study, the p.N78S mutation, a type1 VHL protein mutant, was expressed in VHL-negative renal cell carcinoma cell lines. The authors concluded that VHL has both HIF-á dependent and HIF-á independent functions in regulating tight junctions and cell morphology that likely impact the clinical phenotypes seen in VHL disease (Bangiyeva et al. BMC Cancer 2009. Jul 14;9:229). Of note, this alteration is also referred to as 446A>G (Asn149Ser) in published literature. Based on the supporting evidence, this alteration is interpreted as a disease-causing mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024