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NM_000251.3(MSH2):c.1979A>G (p.Asp660Gly) AND Lynch syndrome

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jun 21, 2019
Review status:
3 stars out of maximum of 4 stars
reviewed by expert panel
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000490598.2

Allele description [Variation Report for NM_000251.3(MSH2):c.1979A>G (p.Asp660Gly)]

NM_000251.3(MSH2):c.1979A>G (p.Asp660Gly)

Gene:
MSH2:mutS homolog 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p21
Genomic location:
Preferred name:
NM_000251.3(MSH2):c.1979A>G (p.Asp660Gly)
HGVS:
  • NC_000002.12:g.47475244A>G
  • NG_007110.2:g.77121A>G
  • NM_000251.3:c.1979A>GMANE SELECT
  • NM_001258281.1:c.1781A>G
  • NP_000242.1:p.Asp660Gly
  • NP_000242.1:p.Asp660Gly
  • NP_001245210.1:p.Asp594Gly
  • LRG_218t1:c.1979A>G
  • LRG_218:g.77121A>G
  • LRG_218p1:p.Asp660Gly
  • NC_000002.11:g.47702383A>G
  • NM_000251.1:c.1979A>G
  • NM_000251.2:c.1979A>G
Protein change:
D594G
Links:
dbSNP: rs1085308057
NCBI 1000 Genomes Browser:
rs1085308057
Molecular consequence:
  • NM_000251.3:c.1979A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001258281.1:c.1781A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Lynch syndrome
Identifiers:
MONDO: MONDO:0005835; MedGen: C4552100

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000579291International Society for Gastrointestinal Hereditary Tumours (InSiGHT)
reviewed by expert panel

(Guidelines v2.4)
Likely pathogenic
(Jun 21, 2019)
germlinecuration

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedcuration

Details of each submission

From International Society for Gastrointestinal Hereditary Tumours (InSiGHT), SCV000579291.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcurationnot provided

Description

Multifactorial likelihood analysis posterior probability 0.95-0.99

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024