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NM_004519.4(KCNQ3):c.913G>T (p.Asp305Tyr) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
May 11, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000490209.1

Allele description [Variation Report for NM_004519.4(KCNQ3):c.913G>T (p.Asp305Tyr)]

NM_004519.4(KCNQ3):c.913G>T (p.Asp305Tyr)

Gene:
KCNQ3:potassium voltage-gated channel subfamily Q member 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q24.22
Genomic location:
Preferred name:
NM_004519.4(KCNQ3):c.913G>T (p.Asp305Tyr)
HGVS:
  • NC_000008.11:g.132175473C>A
  • NG_008854.2:g.310285G>T
  • NM_001204824.2:c.553G>T
  • NM_004519.4:c.913G>TMANE SELECT
  • NP_001191753.1:p.Asp185Tyr
  • NP_001191753.1:p.Asp185Tyr
  • NP_004510.1:p.Asp305Tyr
  • NC_000008.10:g.133187720C>A
  • NM_001204824.1:c.553G>T
Protein change:
D185Y
Links:
dbSNP: rs1085307996
NCBI 1000 Genomes Browser:
rs1085307996
Molecular consequence:
  • NM_001204824.2:c.553G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004519.4:c.913G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000577796GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Likely pathogenic
(May 11, 2015)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000577796.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The D305Y variant has not been published as a pathogenic variant, nor has it been reported as a benign polymorphism to our knowledge. It was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The D305Y variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. This substitution occurs at a position that is conserved across species. In silico analysis predicts this variant is probably damaging to the protein structure/function. A different amino acid substitution at the same position (D305G) and nearby missense variant (E299K, W309R, G310V) have been reported in the Human Gene Mutation Database in association with benign neonatal epilepsy (Stenson et al., 2014), supporting the functional importance of this region of the protein. Therefore, this variant is a strong candidate for a pathogenic variant, however the possibility that it is a benign variant cannot be excluded

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022