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NM_024009.3(GJB3):c.298G>A (p.Glu100Lys) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jul 27, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000490186.1

Allele description [Variation Report for NM_024009.3(GJB3):c.298G>A (p.Glu100Lys)]

NM_024009.3(GJB3):c.298G>A (p.Glu100Lys)

Gene:
GJB3:gap junction protein beta 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p34.3
Genomic location:
Preferred name:
NM_024009.3(GJB3):c.298G>A (p.Glu100Lys)
HGVS:
  • NC_000001.11:g.34785060G>A
  • NG_008309.1:g.8872G>A
  • NM_001005752.2:c.298G>A
  • NM_024009.3:c.298G>AMANE SELECT
  • NP_001005752.1:p.Glu100Lys
  • NP_076872.1:p.Glu100Lys
  • NC_000001.10:g.35250661G>A
  • NM_024009.2:c.298G>A
Protein change:
E100K
Links:
dbSNP: rs1028370381
NCBI 1000 Genomes Browser:
rs1028370381
Molecular consequence:
  • NM_001005752.2:c.298G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024009.3:c.298G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000577607GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Likely pathogenic
(Jul 27, 2016)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000577607.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The E100K missense variant in the GJB3 gene has been reported previously in association with Erythrokeratodermia Variabilis (EKV) in an individual who was homozygous for the variant (Terrinoni et al., 2004). Heterozygous relatives were unaffected in that family. E100K was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. E100K is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. This substitution occurs at a position that is conserved in mammals. In silico analysis is inconsistent in its predictions as to whether or not the variant is damaging to the protein structure/function. A missense variant in a nearby residue (R101Q) havs been reported in the Human Gene Mutation Database in association with EKV (Stenson et al., 2014). Therefore, we consider this variant to be likely pathogenic for autosomal recessive EKV.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022