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NM_000053.4(ATP7B):c.3557-6C>T AND not provided

Germline classification:
Likely benign (4 submissions)
Last evaluated:
Jun 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000488125.34

Allele description [Variation Report for NM_000053.4(ATP7B):c.3557-6C>T]

NM_000053.4(ATP7B):c.3557-6C>T

Gene:
ATP7B:ATPase copper transporting beta [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q14.3
Genomic location:
Preferred name:
NM_000053.4(ATP7B):c.3557-6C>T
HGVS:
  • NC_000013.11:g.51939199G>A
  • NG_008806.1:g.77296C>T
  • NM_000053.4:c.3557-6C>TMANE SELECT
  • NM_001005918.3:c.2936-6C>T
  • NM_001243182.2:c.3224-6C>T
  • NM_001330578.2:c.3323-6C>T
  • NM_001330579.2:c.3305-6C>T
  • NC_000013.10:g.52513335G>A
  • NM_000053.2:c.3557-6C>T
  • NM_000053.3:c.3557-6C>T
  • NM_001005918.2:c.2936-6C>T
Links:
dbSNP: rs140708492
NCBI 1000 Genomes Browser:
rs140708492
Molecular consequence:
  • NM_000053.4:c.3557-6C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001005918.3:c.2936-6C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001243182.2:c.3224-6C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001330578.2:c.3323-6C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001330579.2:c.3305-6C>T - intron variant - [Sequence Ontology: SO:0001627]
Observations:
16

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000527871GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Mar 25, 2021)
germlineclinical testing

Citation Link,

SCV000574958CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(Jun 1, 2024)
germlineclinical testing

Citation Link,

SCV001931634Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV001973879Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes16not providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000527871.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV000574958.32

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided16not providednot providedclinical testingnot provided

Description

ATP7B: BP4, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided16not providednot providednot provided

From Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus, SCV001931634.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001973879.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024