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NM_001347721.2(DYRK1A):c.545_548del (p.Lys182fs) AND not provided

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
May 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000485794.6

Allele description

NM_001347721.2(DYRK1A):c.545_548del (p.Lys182fs)

Gene:
DYRK1A:dual specificity tyrosine phosphorylation regulated kinase 1A [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
21q22.13
Genomic location:
Preferred name:
NM_001347721.2(DYRK1A):c.545_548del (p.Lys182fs)
HGVS:
  • NC_000021.9:g.37486522_37486525del
  • NG_009366.1:g.123966_123969del
  • NM_001347721.2:c.545_548delMANE SELECT
  • NM_001347722.2:c.545_548del
  • NM_001347723.2:c.458_461del
  • NM_001396.5:c.572_575del
  • NM_101395.2:c.572_575del
  • NM_130436.2:c.545_548del
  • NM_130438.2:c.572_575del
  • NP_001334650.1:p.Lys182fs
  • NP_001334651.1:p.Lys182fs
  • NP_001334652.1:p.Lys153fs
  • NP_001387.2:p.Lys191fs
  • NP_567824.1:p.Lys191fs
  • NP_569120.1:p.Lys182fs
  • NP_569122.1:p.Lys191fs
  • NC_000021.8:g.38858822_38858825del
  • NC_000021.8:g.38858824_38858827del
  • NM_001396.3:c.572_575del
  • NM_001396.3:c.572_575delAGAA
Protein change:
K153fs
Links:
dbSNP: rs1064796367
NCBI 1000 Genomes Browser:
rs1064796367
Molecular consequence:
  • NM_001347721.2:c.545_548del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001347722.2:c.545_548del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001347723.2:c.458_461del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001396.5:c.572_575del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_101395.2:c.572_575del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_130436.2:c.545_548del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_130438.2:c.572_575del - frameshift variant - [Sequence Ontology: SO:0001589]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000573020GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Pathogenic
(May 9, 2019)
germlineclinical testing

Citation Link,

SCV005050374CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Pathogenic
(May 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000573020.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Frameshift variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss-of-function is a known mechanism of disease; Not observed in large population cohorts (Lek et al., 2016); Has not been previously published as pathogenic or benign to our knowledge

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV005050374.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

DYRK1A: PVS1, PM2, PM6, PS4:Moderate

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Sep 29, 2024