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NM_017780.4(CHD7):c.4088T>A (p.Leu1363His) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Mar 10, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000485513.1

Allele description [Variation Report for NM_017780.4(CHD7):c.4088T>A (p.Leu1363His)]

NM_017780.4(CHD7):c.4088T>A (p.Leu1363His)

Gene:
CHD7:chromodomain helicase DNA binding protein 7 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q12.2
Genomic location:
Preferred name:
NM_017780.4(CHD7):c.4088T>A (p.Leu1363His)
HGVS:
  • NC_000008.11:g.60836915T>A
  • NG_007009.1:g.163136T>A
  • NM_001316690.1:c.1717-25314T>A
  • NM_017780.4:c.4088T>AMANE SELECT
  • NP_060250.2:p.Leu1363His
  • LRG_176t1:c.4088T>A
  • LRG_176:g.163136T>A
  • NC_000008.10:g.61749474T>A
  • NM_017780.2:c.4088T>A
Protein change:
L1363H
Links:
dbSNP: rs1064796242
NCBI 1000 Genomes Browser:
rs1064796242
Molecular consequence:
  • NM_001316690.1:c.1717-25314T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_017780.4:c.4088T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000572768GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Likely pathogenic
(Mar 10, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000572768.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The L1363H missense substitution has not been published as a pathogenic variant nor has it been reported as a benign variant to our knowledge. It was not observed in approximately 6,200 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. L1363H is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. This substitution occurs at a position that is conserved across species and in silico analysis predicts this variant is probably damaging to the protein structure/function. However, no missense variants in nearby residues have been reported in the Human Gene Mutation Database (Stenson et al., 2014). Additionally, few pathogenic missense variants have been reported in CHARGE syndrome, as most pathogenic variants introduce a premature termination codon.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022