NM_000465.4(BARD1):c.1922G>A (p.Arg641Gln) AND not provided

Germline classification:: Uncertain significance (2 submissions)
Last evaluated:: Apr 13, 2023
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000483818.6

Allele description [Variation Report for NM_000465.4(BARD1):c.1922G>A (p.Arg641Gln)]

NM_000465.4(BARD1):c.1922G>A (p.Arg641Gln)

Gene:

BARD1:BRCA1 associated RING domain 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2q35

Genomic location:

Preferred name:

NM_000465.4(BARD1):c.1922G>A (p.Arg641Gln)

HGVS:

NC_000002.12:g.214730490C>T
NG_012047.3:g.84222G>A
NM_000465.4:c.1922G>AMANE SELECT
NM_001282543.2:c.1865G>A
NM_001282545.2:c.569G>A
NM_001282548.2:c.512G>A
NM_001282549.2:c.383G>A
NP_000456.2:p.Arg641Gln
NP_001269472.1:p.Arg622Gln
NP_001269474.1:p.Arg190Gln
NP_001269477.1:p.Arg171Gln
NP_001269478.1:p.Arg128Gln
LRG_297t1:c.1922G>A
LRG_297:g.84222G>A
LRG_297p1:p.Arg641Gln
NC_000002.11:g.215595214C>T
NG_012047.2:g.84215G>A
NM_000465.2:c.1922G>A
NM_000465.3:c.1922G>A
NR_104212.2:n.1887G>A
NR_104215.2:n.1830G>A
NR_104216.2:n.1086G>A

Protein change:

R128Q

Links:

dbSNP: rs752870879

NCBI 1000 Genomes Browser:

rs752870879

Molecular consequence:

NM_000465.4:c.1922G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001282543.2:c.1865G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001282545.2:c.569G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001282548.2:c.512G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001282549.2:c.383G>A - missense variant - [Sequence Ontology: SO:0001583]
NR_104212.2:n.1887G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_104215.2:n.1830G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_104216.2:n.1086G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000565743	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Uncertain significance (Apr 13, 2023)	germline	clinical testing	Citation Link,
SCV001133444	Quest Diagnostics Nichols Institute San Juan Capistrano	criteria provided, single submitter (Quest Diagnostics criteria)	Uncertain significance (May 8, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000565743

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Uncertain significance
(Apr 13, 2023)

germline

clinical testing

Citation Link,

SCV001133444

Quest Diagnostics Nichols Institute San Juan Capistrano

criteria provided, single submitter

(Quest Diagnostics criteria)

Uncertain significance
(May 8, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]

PMID:: 26467025
PMCID:: PMC4737317

Details of each submission

From GeneDx, SCV000565743.6

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

In silico analysis supports that this missense variant does not alter protein structure/function; A published functional study suggests no damaging effect: homology-directed repair activity similar to wild-type (Adamovich et al., 2019); This variant is associated with the following publications: (PMID: 30925164, 17550235, 29292755)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV001133444.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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