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NM_003000.3(SDHB):c.649C>G (p.Arg217Gly) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jul 21, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000480999.2

Allele description [Variation Report for NM_003000.3(SDHB):c.649C>G (p.Arg217Gly)]

NM_003000.3(SDHB):c.649C>G (p.Arg217Gly)

Gene:
SDHB:succinate dehydrogenase complex iron sulfur subunit B [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p36.13
Genomic location:
Preferred name:
NM_003000.3(SDHB):c.649C>G (p.Arg217Gly)
HGVS:
  • NC_000001.11:g.17022724G>C
  • NG_012340.1:g.36447C>G
  • NM_003000.3:c.649C>GMANE SELECT
  • NP_002991.2:p.Arg217Gly
  • NP_002991.2:p.Arg217Gly
  • LRG_316t1:c.649C>G
  • LRG_316:g.36447C>G
  • LRG_316p1:p.Arg217Gly
  • NC_000001.10:g.17349219G>C
  • NM_003000.2:c.649C>G
Protein change:
R217G
Links:
dbSNP: rs200245469
NCBI 1000 Genomes Browser:
rs200245469
Molecular consequence:
  • NM_003000.3:c.649C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000567351GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Pathogenic
(Jul 21, 2015)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000567351.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The R217G variant has been reported in association with paraganglioma-pheochromocytoma syndrome(Sanso et al., 2012; van et al. 2009). The R217G substitution was not observed in approximately 6,500individuals of European and African American ancestry in the NHLBI Exome Sequencing Project,indicating it is not a common benign variant in these populations. The R217G variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residuesdiffer in polarity, charge, size and/or other properties. This substitution occurs at a position that isconserved across species. In silico analysis predicts this variant is probably damaging to the proteinstructure/function. Missense variants in this residue (R217G and R217L) and in nearby residues (G208E,Q214H, A215T, W218S, D224H) have been reported in the Human Gene Mutation Database inassociation with SDHB-related disorders (Stenson et al., 2014), supporting the functional importance of thisregion of the protein. Therefore, we consider this variant to be pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024