U.S. flag

An official website of the United States government

NM_004415.4(DSP):c.3160_3169del (p.Lys1054fs) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 23, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000480618.1

Allele description [Variation Report for NM_004415.4(DSP):c.3160_3169del (p.Lys1054fs)]

NM_004415.4(DSP):c.3160_3169del (p.Lys1054fs)

Gene:
DSP:desmoplakin [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
6p24.3
Genomic location:
Preferred name:
NM_004415.4(DSP):c.3160_3169del (p.Lys1054fs)
HGVS:
  • NC_000006.11:g.7579580_7579589del
  • NC_000006.12:g.7579350_7579359del
  • NG_008803.1:g.42714_42723del
  • NM_001008844.3:c.3160_3169del
  • NM_001319034.2:c.3160_3169del
  • NM_004415.4:c.3160_3169delMANE SELECT
  • NP_001008844.1:p.Lys1054fs
  • NP_001305963.1:p.Lys1054fs
  • NP_004406.2:p.Lys1054fs
  • LRG_423t1:c.3160_3169del
  • LRG_423:g.42714_42723del
  • NC_000006.11:g.7579580_7579589del
  • NC_000006.11:g.7579583_7579592del
  • NC_000006.11:g.7579583_7579592delAAGAACAAAT
  • NM_004415.2:c.3160_3169delAAGAACAAAT
  • c.3160_3169delAAGAACAAAT
  • p.Lys1054SerfsX26
Protein change:
K1054fs
Links:
dbSNP: rs397516932
NCBI 1000 Genomes Browser:
rs397516932
Molecular consequence:
  • NM_001008844.3:c.3160_3169del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001319034.2:c.3160_3169del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_004415.4:c.3160_3169del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000566973GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Pathogenic
(Jun 23, 2015)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000566973.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.3160_3169del10 variant in the DSP gene has been reported in at least one individual enrolled in theJohns Hopkins ARVD/C registry (Bhonsale et al., 2013). This deletion causes a shift in reading framestarting at codon Lysine 1054, changing it to a Serine, and creating a premature stop codon at position 26of the new reading frame, denoted p.Lys1054SerfsX26. This deletion is expected to result in either anabnormal, truncated protein product or loss of protein from this allele through nonsense-mediated mRNAdecay. Other frameshift variants in the DSP gene have been reported in HGMD in association withcardiomyopathy (Stenson P et al., 2014). Furthermore, the c.3160_3169del10 variant was not observed inapproximately 6,500 individuals of European and African American ancestry in the NHLBI ExomeSequencing Project, indicating it is not a common benign variant in these populations.In summary, c.3160_3169del10 in the DSP gene is interpreted as a pathogenic variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024