NM_001278116.2(L1CAM):c.3523G>A (p.Glu1175Lys) AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 8, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000479930.3

Allele description [Variation Report for NM_001278116.2(L1CAM):c.3523G>A (p.Glu1175Lys)]

NM_001278116.2(L1CAM):c.3523G>A (p.Glu1175Lys)

Gene:

L1CAM:L1 cell adhesion molecule [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

Xq28

Genomic location:

Preferred name:

NM_001278116.2(L1CAM):c.3523G>A (p.Glu1175Lys)

HGVS:

NC_000023.11:g.153863484C>T
NG_009645.3:g.50740G>A
NM_000425.5:c.3523G>A
NM_001143963.2:c.3508G>A
NM_001278116.2:c.3523G>AMANE SELECT
NM_024003.3:c.3523G>A
NP_000416.1:p.Glu1175Lys
NP_001137435.1:p.Glu1170Lys
NP_001265045.1:p.Glu1175Lys
NP_076493.1:p.Glu1175Lys
LRG_14t1:c.3523G>A
LRG_14t2:c.3523G>A
LRG_14p1:p.Glu1175Lys
LRG_14p2:p.Glu1175Lys
NC_000023.10:g.153128939C>T
NM_000425.3:c.3523G>A

Protein change:

E1170K

Links:

dbSNP: rs1064796541

NCBI 1000 Genomes Browser:

rs1064796541

Molecular consequence:

NM_000425.5:c.3523G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001143963.2:c.3508G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001278116.2:c.3523G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_024003.3:c.3523G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000573356	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Uncertain significance (Oct 8, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000573356

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Uncertain significance
(Oct 8, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV000573356.5

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Has not been previously reported in association with disease to our knowledge; In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: Murshed2019[article], 25641508)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 26, 2024

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Relating variation to medicine