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NM_000251.3(MSH2):c.1831G>C (p.Val611Leu) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Nov 17, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000478694.1

Allele description [Variation Report for NM_000251.3(MSH2):c.1831G>C (p.Val611Leu)]

NM_000251.3(MSH2):c.1831G>C (p.Val611Leu)

Gene:
MSH2:mutS homolog 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p21
Genomic location:
Preferred name:
NM_000251.3(MSH2):c.1831G>C (p.Val611Leu)
HGVS:
  • NC_000002.12:g.47475096G>C
  • NG_007110.2:g.76973G>C
  • NM_000251.3:c.1831G>CMANE SELECT
  • NM_001258281.1:c.1633G>C
  • NP_000242.1:p.Val611Leu
  • NP_000242.1:p.Val611Leu
  • NP_001245210.1:p.Val545Leu
  • LRG_218t1:c.1831G>C
  • LRG_218:g.76973G>C
  • LRG_218p1:p.Val611Leu
  • NC_000002.11:g.47702235G>C
  • NM_000251.1:c.1831G>C
  • NM_000251.2:c.1831G>C
Protein change:
V545L
Links:
dbSNP: rs369385048
NCBI 1000 Genomes Browser:
rs369385048
Molecular consequence:
  • NM_000251.3:c.1831G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001258281.1:c.1633G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000572308GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Nov 17, 2016)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000572308.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is denoted MSH2 c.1831G>C at the cDNA level, p.Val611Leu (V611L) at the protein level, and results in the change of a Valine to a Leucine (GTG>CTG). This variant has not, to our knowledge, been published in the literature as pathogenic or benign. MSH2 Val611Leu was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, suggesting it is not a common benign variant in these populations. Since Valine and Leucine share similar properties, this is considered a conservative amino acid substitution. MSH2 Val611Leu occurs at a position where amino acids with properties similar to Valine are tolerated across species and is located within a region of interaction with EXO1, MSH3, and MSH6 as well as within the Lever domain (Guerrette 1998, Lutzen 2008, Kansikas 2011). In silico analyses are inconsistent regarding the effect this variant may have on protein structure and function. Based on currently available evidence, it is unclear whether MSH2 Val611Leu is a pathogenic or benign variant. We consider it to be a variant of uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024