NM_005460.4(SNCAIP):c.2125G>C (p.Glu709Gln) AND not specified

Germline classification:: Likely benign (1 submission)
Last evaluated:: Mar 29, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000455101.4

Allele description [Variation Report for NM_005460.4(SNCAIP):c.2125G>C (p.Glu709Gln)]

NM_005460.4(SNCAIP):c.2125G>C (p.Glu709Gln)

Genes:

SNCAIP:synuclein alpha interacting protein [Gene - OMIM - HGNC]
MGC32805:uncharacterized LOC153163 [Gene]

Variant type:

single nucleotide variant

Cytogenetic location:

5q23.2

Genomic location:

Preferred name:

NM_005460.4(SNCAIP):c.2125G>C (p.Glu709Gln)

HGVS:

NC_000005.10:g.122450972G>C
NG_011486.2:g.143848G>C
NM_001242935.3:c.1027G>C
NM_001308100.2:c.2266G>C
NM_001308105.1:c.1945G>C
NM_001308106.1:c.1021G>C
NM_001308107.2:c.1027G>C
NM_001308108.1:c.1207G>C
NM_001308109.2:c.913G>C
NM_005460.4:c.2125G>CMANE SELECT
NP_001229864.1:p.Glu343Gln
NP_001295029.1:p.Glu756Gln
NP_001295034.1:p.Glu649Gln
NP_001295035.1:p.Glu341Gln
NP_001295036.1:p.Glu343Gln
NP_001295037.1:p.Glu403Gln
NP_001295038.1:p.Glu305Gln
NP_005451.2:p.Glu709Gln
NC_000005.9:g.121786667G>C
NM_005460.2:c.2125G>C
NM_005460.3:c.2125G>C
NR_131761.1:n.2537G>C
NR_131762.1:n.1266G>C

Protein change:

E305Q

Links:

dbSNP: rs55712196

NCBI 1000 Genomes Browser:

rs55712196

Molecular consequence:

NM_001242935.3:c.1027G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001308100.2:c.2266G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001308105.1:c.1945G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001308106.1:c.1021G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001308107.2:c.1027G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001308108.1:c.1207G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001308109.2:c.913G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_005460.4:c.2125G>C - missense variant - [Sequence Ontology: SO:0001583]
NR_131761.1:n.2537G>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_131762.1:n.1266G>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000540395	Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine	criteria provided, single submitter (LMM Criteria)	Likely benign (Mar 29, 2016)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000540395

Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine

criteria provided, single submitter

(LMM Criteria)

Likely benign
(Mar 29, 2016)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]

PMID:: 24033266
PMCID:: PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000540395.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

Variant identified in a genome or exome case(s) and assessed due to predicted null impact of the variant or pathogenic assertions in the literature or databases. Disclaimer: This variant has not undergone full assessment. The following are preliminary notes: Frequency in ESP (all): 103/13006=0.79%; Frequency in ESP (EA): 94/8600=1.09%

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 20, 2024

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