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NM_000527.5(LDLR):c.2320G>A (p.Asp774Asn) AND Hypercholesterolemia, familial, 1

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 27, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000454979.2

Allele description [Variation Report for NM_000527.5(LDLR):c.2320G>A (p.Asp774Asn)]

NM_000527.5(LDLR):c.2320G>A (p.Asp774Asn)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.2320G>A (p.Asp774Asn)
HGVS:
  • NC_000019.10:g.11128016G>A
  • NG_009060.1:g.43636G>A
  • NM_000527.5:c.2320G>AMANE SELECT
  • NM_001195798.2:c.2320G>A
  • NM_001195799.2:c.2197G>A
  • NM_001195800.2:c.1816G>A
  • NM_001195803.2:c.1786G>A
  • NP_000518.1:p.Asp774Asn
  • NP_000518.1:p.Asp774Asn
  • NP_001182727.1:p.Asp774Asn
  • NP_001182728.1:p.Asp733Asn
  • NP_001182729.1:p.Asp606Asn
  • NP_001182732.1:p.Asp596Asn
  • LRG_274t1:c.2320G>A
  • LRG_274:g.43636G>A
  • LRG_274p1:p.Asp774Asn
  • NC_000019.9:g.11238692G>A
  • NM_000527.4:c.2320G>A
Protein change:
D596N
Links:
dbSNP: rs138190838
NCBI 1000 Genomes Browser:
rs138190838
Molecular consequence:
  • NM_000527.5:c.2320G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195798.2:c.2320G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195799.2:c.2197G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195800.2:c.1816G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195803.2:c.1786G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Hypercholesterolemia, familial, 1
Synonyms:
LDL RECEPTOR DISORDER; Hyperlipoproteinemia Type IIa; HYPER-LOW-DENSITY-LIPOPROTEINEMIA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007750; MedGen: C0745103; Orphanet: 391665; OMIM: 143890

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000540904Molecular Genetics Laboratory, Centre for Cardiovascular Surgery and Transplantation

See additional submitters

criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Mar 27, 2017)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Caucasianunknownyes11not provided3976yesclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Molecular Genetics Laboratory, Centre for Cardiovascular Surgery and Transplantation, SCV000540904.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Caucasian1not providedyesclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyes3976Whole bloodnot provided1not provided1not provided

Last Updated: Sep 29, 2024