U.S. flag

An official website of the United States government

NM_001794.5(CDH4):c.1976G>C (p.Arg659Pro) AND Abnormal brain morphology

Germline classification:
Likely pathogenic (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000454293.1

Allele description [Variation Report for NM_001794.5(CDH4):c.1976G>C (p.Arg659Pro)]

NM_001794.5(CDH4):c.1976G>C (p.Arg659Pro)

Gene:
CDH4:cadherin 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
20q13.33
Genomic location:
Preferred name:
NM_001794.5(CDH4):c.1976G>C (p.Arg659Pro)
HGVS:
  • NC_000020.11:g.61928394G>C
  • NM_001252338.2:c.1865G>C
  • NM_001252339.3:c.1754G>C
  • NM_001794.5:c.1976G>CMANE SELECT
  • NP_001239267.1:p.Arg622Pro
  • NP_001239268.1:p.Arg585Pro
  • NP_001785.2:p.Arg659Pro
  • NC_000020.10:g.60503452G>C
  • NM_001794.4:c.1976G>C
Protein change:
R585P
Links:
dbSNP: rs765815715
NCBI 1000 Genomes Browser:
rs765815715
Molecular consequence:
  • NM_001252338.2:c.1865G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001252339.3:c.1754G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001794.5:c.1976G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Abnormal brain morphology
Synonyms:
Abnormality of brain morphology
Identifiers:
MedGen: C4021085; Human Phenotype Ontology: HP:0012443

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000537928Lupski Lab, Baylor-Hopkins CMG, Baylor College of Medicine
criteria provided, single submitter

(Karaca et al. (Neuron 2015))		Likely pathogenicinheritedresearch

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedinheritedyesnot providednot providednot providednot providednot providedresearch

Citations

PubMed

Genes that Affect Brain Structure and Function Identified by Rare Variant Analyses of Mendelian Neurologic Disease.

Karaca E, Harel T, Pehlivan D, Jhangiani SN, Gambin T, Coban Akdemir Z, Gonzaga-Jauregui C, Erdin S, Bayram Y, Campbell IM, Hunter JV, Atik MM, Van Esch H, Yuan B, Wiszniewski W, Isikay S, Yesil G, Yuregir OO, Tug Bozdogan S, Aslan H, Aydin H, Tos T, et al.

Neuron. 2015 Nov 4;88(3):499-513. doi: 10.1016/j.neuron.2015.09.048.

PubMed [citation]
PMID:
26539891
PMCID:
PMC4824012

Details of each submission

From Lupski Lab, Baylor-Hopkins CMG, Baylor College of Medicine, SCV000537928.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1inheritedyesnot providedBloodnot providednot providednot providednot providednot provided

Last Updated: Nov 11, 2023