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NM_001374828.1(ARID1B):c.4117A>C (p.Lys1373Gln) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 7, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000443436.1

Allele description [Variation Report for NM_001374828.1(ARID1B):c.4117A>C (p.Lys1373Gln)]

NM_001374828.1(ARID1B):c.4117A>C (p.Lys1373Gln)

Gene:
ARID1B:AT-rich interaction domain 1B [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6q25.3
Genomic location:
Preferred name:
NM_001374828.1(ARID1B):c.4117A>C (p.Lys1373Gln)
HGVS:
  • NC_000006.12:g.157190096A>C
  • NG_066624.1:g.419071A>C
  • NM_001363725.2:c.1618A>C
  • NM_001371656.1:c.3997A>C
  • NM_001374820.1:c.3997A>C
  • NM_001374828.1:c.4117A>CMANE SELECT
  • NM_017519.3:c.3958A>C
  • NM_020732.3:c.3748A>C
  • NP_001350654.1:p.Lys540Gln
  • NP_001358585.1:p.Lys1333Gln
  • NP_001361749.1:p.Lys1333Gln
  • NP_001361757.1:p.Lys1373Gln
  • NP_059989.3:p.Lys1320Gln
  • NP_065783.3:p.Lys1250Gln
  • NC_000006.11:g.157511230A>C
Protein change:
K1250Q
Links:
dbSNP: rs1057522635
NCBI 1000 Genomes Browser:
rs1057522635
Molecular consequence:
  • NM_001363725.2:c.1618A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371656.1:c.3997A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374820.1:c.3997A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374828.1:c.4117A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_017519.3:c.3958A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_020732.3:c.3748A>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000528711GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))		Uncertain significance
(Jun 7, 2016) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000528711.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The K1250Q in the ARID1B gene has not been reported previously as a pathogenic variant, nor as a benign variant, to our knowledge. The K1250Q variant was not observed in approximately 6500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The K1250Q variant is a semi-conservative amino acid substitution, which may impact secondary protein structure as these residues differ in some properties. This substitution occurs at a position where amino acids with similar properties to Lysine are tolerated across species. In silico analysis predicts this variant is probably damaging to the protein structure/function. We interpret K1250Q as a variant of uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022