NM_000059.4(BRCA2):c.492G>A (p.Leu164=) AND not specified

Germline classification:: Likely benign (1 submission)
Last evaluated:: Nov 21, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000440683.1

Allele description [Variation Report for NM_000059.4(BRCA2):c.492G>A (p.Leu164=)]

NM_000059.4(BRCA2):c.492G>A (p.Leu164=)

Gene:

BRCA2:BRCA2 DNA repair associated [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

13q13.1

Genomic location:

Preferred name:

NM_000059.4(BRCA2):c.492G>A (p.Leu164=)

HGVS:

NC_000013.11:g.32326258G>A
NG_012772.3:g.15779G>A
NM_000059.4:c.492G>AMANE SELECT
NP_000050.2:p.Leu164=
NP_000050.3:p.Leu164=
LRG_293t1:c.492G>A
LRG_293:g.15779G>A
LRG_293p1:p.Leu164=
NC_000013.10:g.32900395G>A
NM_000059.3:c.492G>A

Links:

dbSNP: rs1057520502

NCBI 1000 Genomes Browser:

rs1057520502

Molecular consequence:

NM_000059.4:c.492G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Sample from Rhodococcoides fascians 05-561-1
Sample from Rhodococcoides fascians 05-561-1

biosample
flagellar biosynthesis protein FlhF [Xanthomonas oryzae pv. oryzae]
flagellar biosynthesis protein FlhF [Xanthomonas oryzae pv. oryzae]
gi|2557447816|gnl|PRJNA269420|DXO09 330|gb|WJS67595.1|

Protein
Ligiidae 12S ribosomal RNA gene, partial sequence; mitochondrial.
Ligiidae 12S ribosomal RNA gene, partial sequence; mitochondrial.
PopSet: 83778002

PopSet
Oniscidea small subunit ribosomal RNA gene, complete sequence.
Oniscidea small subunit ribosomal RNA gene, complete sequence.
PopSet: 22091417

PopSet
Dytiscoidea cytochrome b (CytB) gene, partial cds; mitochondrial.
Dytiscoidea cytochrome b (CytB) gene, partial cds; mitochondrial.
PopSet: 39653091

PopSet

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000515721	GeneDx	criteria provided, single submitter (GeneDx Variant Classification (06012015))	Likely benign (Nov 21, 2016)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000515721

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification (06012015))

Likely benign
(Nov 21, 2016)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV000515721.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 1, 2024

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