NM_000546.6(TP53):c.643A>G (p.Ser215Gly) AND Carcinoma of esophagus

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: May 31, 2016
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000437324.2

Allele description [Variation Report for NM_000546.6(TP53):c.643A>G (p.Ser215Gly)]

NM_000546.6(TP53):c.643A>G (p.Ser215Gly)

Gene:

TP53:tumor protein p53 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

17p13.1

Genomic location:

Preferred name:

NM_000546.6(TP53):c.643A>G (p.Ser215Gly)

HGVS:

NC_000017.11:g.7674888T>C
NG_017013.2:g.17663A>G
NM_000546.6:c.643A>GMANE SELECT
NM_001126112.3:c.643A>G
NM_001126113.3:c.643A>G
NM_001126114.3:c.643A>G
NM_001126115.2:c.247A>G
NM_001126116.2:c.247A>G
NM_001126117.2:c.247A>G
NM_001126118.2:c.526A>G
NM_001276695.3:c.526A>G
NM_001276696.3:c.526A>G
NM_001276697.3:c.166A>G
NM_001276698.3:c.166A>G
NM_001276699.3:c.166A>G
NM_001276760.3:c.526A>G
NM_001276761.3:c.526A>G
NP_000537.3:p.Ser215Gly
NP_000537.3:p.Ser215Gly
NP_001119584.1:p.Ser215Gly
NP_001119585.1:p.Ser215Gly
NP_001119586.1:p.Ser215Gly
NP_001119587.1:p.Ser83Gly
NP_001119588.1:p.Ser83Gly
NP_001119589.1:p.Ser83Gly
NP_001119590.1:p.Ser176Gly
NP_001263624.1:p.Ser176Gly
NP_001263625.1:p.Ser176Gly
NP_001263626.1:p.Ser56Gly
NP_001263627.1:p.Ser56Gly
NP_001263628.1:p.Ser56Gly
NP_001263689.1:p.Ser176Gly
NP_001263690.1:p.Ser176Gly
LRG_321t1:c.643A>G
LRG_321:g.17663A>G
LRG_321p1:p.Ser215Gly
NC_000017.10:g.7578206T>C
NM_000546.4:c.643A>G
NM_000546.5:c.643A>G
P04637:p.Ser215Gly

Protein change:

S176G

Links:

UniProtKB: P04637#VAR_045092; dbSNP: rs886039484

NCBI 1000 Genomes Browser:

rs886039484

Molecular consequence:

NM_000546.6:c.643A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001126112.3:c.643A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001126113.3:c.643A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001126114.3:c.643A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001126115.2:c.247A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001126116.2:c.247A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001126117.2:c.247A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001126118.2:c.526A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001276695.3:c.526A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001276696.3:c.526A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001276697.3:c.166A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001276698.3:c.166A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001276699.3:c.166A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001276760.3:c.526A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001276761.3:c.526A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Carcinoma of esophagus
Synonyms:: Oesophageal carcinoma; Esophageal carcinoma
Identifiers:: MONDO: MONDO:0019086; MedGen: C0152018; Orphanet: 70482; Human Phenotype Ontology: HP:0011459

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Centaurea nigra voucher Hilpold 20093025, Garcia-Jacas & Vilatersana (BC) intern...
Centaurea nigra voucher Hilpold 20093025, Garcia-Jacas & Vilatersana (BC) internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence
gi|566971325|gb|KF721061.1|

Nucleotide
thymidine kinase 2 isoform 5 [Homo sapiens]
thymidine kinase 2 isoform 5 [Homo sapiens]
gi|429836851|ref|NP_001258863.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000509673	Database of Curated Mutations (DoCM)	no assertion criteria provided	Likely pathogenic (May 31, 2016)	somatic	literature only	PubMed (1) [See all records that cite this PMID] Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000509673

Database of Curated Mutations (DoCM)

no assertion criteria provided

Likely pathogenic
(May 31, 2016)

somatic

literature only

PubMed (1)
[See all records that cite this PMID]

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	somatic	yes	not provided	not provided	not provided	not provided	not provided	literature only

Citations

PubMed

Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity.

Chang MT, Asthana S, Gao SP, Lee BH, Chapman JS, Kandoth C, Gao J, Socci ND, Solit DB, Olshen AB, Schultz N, Taylor BS.

Nat Biotechnol. 2016 Feb;34(2):155-63. doi: 10.1038/nbt.3391. Epub 2015 Nov 30.

PubMed [citation]

PMID:: 26619011
PMCID:: PMC4744099

Details of each submission

From Database of Curated Mutations (DoCM), SCV000509673.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	literature only	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	somatic	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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