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NM_000222.3(KIT):c.1676T>C (p.Val559Ala) AND Melanoma

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jul 14, 2015
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000437270.2

Allele description [Variation Report for NM_000222.3(KIT):c.1676T>C (p.Val559Ala)]

NM_000222.3(KIT):c.1676T>C (p.Val559Ala)

Gene:
KIT:KIT proto-oncogene, receptor tyrosine kinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4q12
Genomic location:
Preferred name:
NM_000222.3(KIT):c.1676T>C (p.Val559Ala)
HGVS:
  • NC_000004.12:g.54727444T>C
  • NG_007456.1:g.74450T>C
  • NM_000222.3:c.1676T>CMANE SELECT
  • NM_001093772.2:c.1664T>C
  • NM_001385284.1:c.1679T>C
  • NM_001385285.1:c.1676T>C
  • NM_001385286.1:c.1664T>C
  • NM_001385288.1:c.1667T>C
  • NM_001385290.1:c.1679T>C
  • NM_001385292.1:c.1667T>C
  • NP_000213.1:p.Val559Ala
  • NP_001087241.1:p.Val555Ala
  • NP_001372213.1:p.Val560Ala
  • NP_001372214.1:p.Val559Ala
  • NP_001372215.1:p.Val555Ala
  • NP_001372217.1:p.Val556Ala
  • NP_001372219.1:p.Val560Ala
  • NP_001372221.1:p.Val556Ala
  • LRG_307:g.74450T>C
  • NC_000004.11:g.55593610T>C
  • P10721:p.Val559Ala
Protein change:
V555A; VAL559ALA
Links:
UniProtKB: P10721#VAR_033126; OMIM: 164920.0023; dbSNP: rs121913517
NCBI 1000 Genomes Browser:
rs121913517
Molecular consequence:
  • NM_000222.3:c.1676T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001093772.2:c.1664T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001385284.1:c.1679T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001385285.1:c.1676T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001385286.1:c.1664T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001385288.1:c.1667T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001385290.1:c.1679T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001385292.1:c.1667T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Melanoma
Identifiers:
MONDO: MONDO:0005105; MeSH: D008545; MedGen: C0025202; Human Phenotype Ontology: HP:0002861

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000504176Database of Curated Mutations (DoCM)
no assertion criteria provided
Likely pathogenic
(Jul 14, 2015)
somaticliterature only

PubMed (11)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedsomaticyesnot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Somatic activation of KIT in distinct subtypes of melanoma.

Curtin JA, Busam K, Pinkel D, Bastian BC.

J Clin Oncol. 2006 Sep 10;24(26):4340-6. Epub 2006 Aug 14.

PubMed [citation]
PMID:
16908931

Gain-of-function mutations of c-kit in human gastrointestinal stromal tumors.

Hirota S, Isozaki K, Moriyama Y, Hashimoto K, Nishida T, Ishiguro S, Kawano K, Hanada M, Kurata A, Takeda M, Muhammad Tunio G, Matsuzawa Y, Kanakura Y, Shinomura Y, Kitamura Y.

Science. 1998 Jan 23;279(5350):577-80.

PubMed [citation]
PMID:
9438854
See all PubMed Citations (11)

Details of each submission

From Database of Curated Mutations (DoCM), SCV000504176.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (11)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1somaticyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 16, 2024