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NM_001048174.2(MUTYH):c.1380C>T (p.Thr460=) AND not specified

Germline classification:
Likely benign (2 submissions)
Last evaluated:
Aug 15, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000423962.4

Allele description [Variation Report for NM_001048174.2(MUTYH):c.1380C>T (p.Thr460=)]

NM_001048174.2(MUTYH):c.1380C>T (p.Thr460=)

Gene:
MUTYH:mutY DNA glycosylase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p34.1
Genomic location:
Preferred name:
NM_001048174.2(MUTYH):c.1380C>T (p.Thr460=)
HGVS:
  • NC_000001.11:g.45331194G>A
  • NG_008189.1:g.14277C>T
  • NM_001048171.2:c.1380C>T
  • NM_001048172.2:c.1383C>T
  • NM_001048173.2:c.1380C>T
  • NM_001048174.2:c.1380C>TMANE SELECT
  • NM_001128425.2:c.1464C>T
  • NM_001293190.2:c.1425C>T
  • NM_001293191.2:c.1413C>T
  • NM_001293192.2:c.1104C>T
  • NM_001293195.2:c.1380C>T
  • NM_001293196.2:c.1104C>T
  • NM_001350650.2:c.1035C>T
  • NM_001350651.2:c.1035C>T
  • NM_012222.3:c.1455C>T
  • NP_001041636.2:p.Thr460=
  • NP_001041637.1:p.Thr461=
  • NP_001041638.1:p.Thr460=
  • NP_001041639.1:p.Thr460=
  • NP_001121897.1:p.Thr488=
  • NP_001121897.1:p.Thr488=
  • NP_001280119.1:p.Thr475=
  • NP_001280120.1:p.Thr471=
  • NP_001280121.1:p.Thr368=
  • NP_001280124.1:p.Thr460=
  • NP_001280125.1:p.Thr368=
  • NP_001337579.1:p.Thr345=
  • NP_001337580.1:p.Thr345=
  • NP_036354.1:p.Thr485=
  • LRG_220t1:c.1464C>T
  • LRG_220:g.14277C>T
  • LRG_220p1:p.Thr488=
  • NC_000001.10:g.45796866G>A
  • NM_001128425.1:c.1464C>T
  • NR_146882.2:n.1608C>T
  • NR_146883.2:n.1457C>T
  • p.T488T
Links:
dbSNP: rs373973053
NCBI 1000 Genomes Browser:
rs373973053
Molecular consequence:
  • NR_146882.2:n.1608C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_146883.2:n.1457C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_001048171.2:c.1380C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001048172.2:c.1383C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001048173.2:c.1380C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001048174.2:c.1380C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001128425.2:c.1464C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001293190.2:c.1425C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001293191.2:c.1413C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001293192.2:c.1104C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001293195.2:c.1380C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001293196.2:c.1104C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001350650.2:c.1035C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001350651.2:c.1035C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_012222.3:c.1455C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001337803Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)		Likely benign
(Jan 22, 2020) 		germlineclinical testing

Citation Link,

SCV004024912Center for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely benign
(Aug 15, 2023) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV001337803.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Center for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital, SCV004024912.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024