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NM_000546.6(TP53):c.839G>A (p.Arg280Lys) AND Squamous cell carcinoma of the head and neck

Germline classification:
Likely pathogenic (2 submissions)
Last evaluated:
May 28, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000423448.3

Allele description [Variation Report for NM_000546.6(TP53):c.839G>A (p.Arg280Lys)]

NM_000546.6(TP53):c.839G>A (p.Arg280Lys)

Gene:
TP53:tumor protein p53 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p13.1
Genomic location:
Preferred name:
NM_000546.6(TP53):c.839G>A (p.Arg280Lys)
HGVS:
  • NC_000017.11:g.7673781C>T
  • NG_017013.2:g.18770G>A
  • NM_000546.6:c.839G>AMANE SELECT
  • NM_001126112.3:c.839G>A
  • NM_001126113.3:c.839G>A
  • NM_001126114.3:c.839G>A
  • NM_001126115.2:c.443G>A
  • NM_001126116.2:c.443G>A
  • NM_001126117.2:c.443G>A
  • NM_001126118.2:c.722G>A
  • NM_001276695.3:c.722G>A
  • NM_001276696.3:c.722G>A
  • NM_001276697.3:c.362G>A
  • NM_001276698.3:c.362G>A
  • NM_001276699.3:c.362G>A
  • NM_001276760.3:c.722G>A
  • NM_001276761.3:c.722G>A
  • NP_000537.3:p.Arg280Lys
  • NP_000537.3:p.Arg280Lys
  • NP_001119584.1:p.Arg280Lys
  • NP_001119585.1:p.Arg280Lys
  • NP_001119586.1:p.Arg280Lys
  • NP_001119587.1:p.Arg148Lys
  • NP_001119588.1:p.Arg148Lys
  • NP_001119589.1:p.Arg148Lys
  • NP_001119590.1:p.Arg241Lys
  • NP_001263624.1:p.Arg241Lys
  • NP_001263625.1:p.Arg241Lys
  • NP_001263626.1:p.Arg121Lys
  • NP_001263627.1:p.Arg121Lys
  • NP_001263628.1:p.Arg121Lys
  • NP_001263689.1:p.Arg241Lys
  • NP_001263690.1:p.Arg241Lys
  • LRG_321t1:c.839G>A
  • LRG_321:g.18770G>A
  • LRG_321p1:p.Arg280Lys
  • NC_000017.10:g.7577099C>T
  • NM_000546.4:c.839G>A
  • NM_000546.5:c.839G>A
Protein change:
R121K
Links:
dbSNP: rs121912660
NCBI 1000 Genomes Browser:
rs121912660
Molecular consequence:
  • NM_000546.6:c.839G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126112.3:c.839G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126113.3:c.839G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126114.3:c.839G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126115.2:c.443G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126116.2:c.443G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126117.2:c.443G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126118.2:c.722G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276695.3:c.722G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276696.3:c.722G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276697.3:c.362G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276698.3:c.362G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276699.3:c.362G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276760.3:c.722G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276761.3:c.722G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Squamous cell carcinoma of the head and neck (HNSCC)
Synonyms:
Head and neck squamous cell carcinoma; Carcinoma, squamous cell of head and neck; Squamous cell carcinoma, head and neck, somatic
Identifiers:
MONDO: MONDO:0010150; MeSH: D000077195; MedGen: C1168401; Orphanet: 67037; OMIM: 275355

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000509517Database of Curated Mutations (DoCM)
no assertion criteria provided
Likely pathogenic
(May 31, 2016) 		somaticliterature only

PubMed (1)
[See all records that cite this PMID]

Citation Link,

SCV001140249Mendelics
criteria provided, single submitter

(Mendelics Assertion Criteria 2017)		Likely pathogenic
(May 28, 2019) 		unknownclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedsomaticyesnot providednot providednot providednot providednot providedliterature only
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity.

Chang MT, Asthana S, Gao SP, Lee BH, Chapman JS, Kandoth C, Gao J, Socci ND, Solit DB, Olshen AB, Schultz N, Taylor BS.

Nat Biotechnol. 2016 Feb;34(2):155-63. doi: 10.1038/nbt.3391. Epub 2015 Nov 30.

PubMed [citation]
PMID:
26619011
PMCID:
PMC4744099

Details of each submission

From Database of Curated Mutations (DoCM), SCV000509517.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1somaticyesnot providednot providednot providednot providednot providednot providednot provided

From Mendelics, SCV001140249.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 12, 2024