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NM_000222.3(KIT):c.1468G>A (p.Glu490Lys) AND Thymoma

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Oct 2, 2014
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000419707.1

Allele description [Variation Report for NM_000222.3(KIT):c.1468G>A (p.Glu490Lys)]

NM_000222.3(KIT):c.1468G>A (p.Glu490Lys)

Gene:
KIT:KIT proto-oncogene, receptor tyrosine kinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4q12
Genomic location:
Preferred name:
NM_000222.3(KIT):c.1468G>A (p.Glu490Lys)
HGVS:
  • NC_000004.12:g.54725978G>A
  • NG_007456.1:g.72984G>A
  • NM_000222.3:c.1468G>AMANE SELECT
  • NM_001093772.2:c.1468G>A
  • NM_001385284.1:c.1471G>A
  • NM_001385285.1:c.1468G>A
  • NM_001385286.1:c.1468G>A
  • NM_001385288.1:c.1471G>A
  • NM_001385290.1:c.1471G>A
  • NM_001385292.1:c.1471G>A
  • NP_000213.1:p.Glu490Lys
  • NP_001087241.1:p.Glu490Lys
  • NP_001372213.1:p.Glu491Lys
  • NP_001372214.1:p.Glu490Lys
  • NP_001372215.1:p.Glu490Lys
  • NP_001372217.1:p.Glu491Lys
  • NP_001372219.1:p.Glu491Lys
  • NP_001372221.1:p.Glu491Lys
  • LRG_307:g.72984G>A
  • NC_000004.11:g.55592144G>A
Protein change:
E490K
Links:
dbSNP: rs1057519701
NCBI 1000 Genomes Browser:
rs1057519701
Molecular consequence:
  • NM_000222.3:c.1468G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001093772.2:c.1468G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001385284.1:c.1471G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001385285.1:c.1468G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001385286.1:c.1468G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001385288.1:c.1471G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001385290.1:c.1471G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001385292.1:c.1471G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Thymoma
Identifiers:
MONDO: MONDO:0006456; MeSH: D013945; MedGen: C0040100; Human Phenotype Ontology: HP:0100522

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000504160Database of Curated Mutations (DoCM)
no assertion criteria provided
Pathogenic
(Oct 2, 2014)
somaticliterature only

PubMed (2)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedsomaticyesnot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Activating c-KIT mutations in a subset of thymic carcinoma and response to different c-KIT inhibitors.

Schirosi L, Nannini N, Nicoli D, Cavazza A, Valli R, Buti S, Garagnani L, Sartori G, Calabrese F, Marchetti A, Buttitta F, Felicioni L, Migaldi M, Rea F, Di Chiara F, Mengoli MC, Rossi G.

Ann Oncol. 2012 Sep;23(9):2409-2414. doi: 10.1093/annonc/mdr626. Epub 2012 Feb 21.

PubMed [citation]
PMID:
22357254

Large-scale analysis of KIT aberrations in Chinese patients with melanoma.

Kong Y, Si L, Zhu Y, Xu X, Corless CL, Flaherty KT, Li L, Li H, Sheng X, Cui C, Chi Z, Li S, Han M, Mao L, Lu A, Guo J.

Clin Cancer Res. 2011 Apr 1;17(7):1684-91. doi: 10.1158/1078-0432.CCR-10-2346. Epub 2011 Feb 15.

PubMed [citation]
PMID:
21325067

Details of each submission

From Database of Curated Mutations (DoCM), SCV000504160.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1somaticyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022