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NM_014604.4(TAX1BP3):c.98T>C (p.Ile33Thr) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 1, 2020
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000412628.3

Allele description [Variation Report for NM_014604.4(TAX1BP3):c.98T>C (p.Ile33Thr)]

NM_014604.4(TAX1BP3):c.98T>C (p.Ile33Thr)

Genes:
P2RX5-TAX1BP3:P2RX5-TAX1BP3 readthrough (NMD candidate) [Gene - HGNC]
TAX1BP3:Tax1 binding protein 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p13.2
Genomic location:
Preferred name:
NM_014604.4(TAX1BP3):c.98T>C (p.Ile33Thr)
HGVS:
  • NC_000017.11:g.3664740A>G
  • NG_012489.2:g.33273A>G
  • NG_053154.1:g.8940T>C
  • NM_001204698.2:c.98T>C
  • NM_014604.4:c.98T>CMANE SELECT
  • NP_001191627.1:p.Ile33Thr
  • NP_055419.1:p.Ile33Thr
  • NC_000017.10:g.3568034A>G
  • NM_014604.3:c.98T>C
  • NR_037928.1:n.5153T>C
Protein change:
I33T; ILE33THR
Links:
OMIM: 616484.0001; dbSNP: rs1057517690
NCBI 1000 Genomes Browser:
rs1057517690
Molecular consequence:
  • NM_001204698.2:c.98T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_014604.4:c.98T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NR_037928.1:n.5153T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000490339OMIM
no assertion criteria provided
Uncertain significance
(May 1, 2020)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Mutations in TAX1BP3 cause dilated cardiomyopathy with septo-optic dysplasia.

Reinstein E, Orvin K, Tayeb-Fligelman E, Stiebel-Kalish H, Tzur S, Pimienta AL, Bazak L, Bengal T, Cohen L, Gaton DD, Bormans C, Landau M, Kornowski R, Shohat M, Behar DM.

Hum Mutat. 2015 Apr;36(4):439-42. doi: 10.1002/humu.22759. Epub 2015 Mar 16.

PubMed [citation]
PMID:
25645515

Details of each submission

From OMIM, SCV000490339.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

This variant is classified as a variant of unknown significance because its contribution to a syndrome consisting of dilated cardiomyopathy, septooptic dysplasia, hypogonadotropic hypogonadism, and dysmorphic features has not been confirmed.

Reinstein et al. (2015) studied a multiply consanguineous Bedouin family in which 2 brothers exhibited dilated cardiomyopathy, septooptic dysplasia, hypogonadotropic hypogonadism, and dysmorphic features. Chromosomal microarray in the older brother showed no copy number variants (CNVs), but multiple runs of homozygosity were detected. Whole-exome sequencing in the 2 affected sibs revealed homozygosity for a c.98T-C transition in the TAX1BP3 gene (c.98T-C, NM_014604.3), resulting in an ile33-to-thr (I33T) substitution at a highly conserved residue within the core of a hydrophobic binding pocket. The unaffected parents and 7 unaffected sibs were heterozygous for the mutation. Brain MRI in the affected brothers revealed agenesis of the corpus callosum and absence of the septum pellucidum in both; the older brother had a normal-sized sella with no evidence of pituitary adenoma or hypothalamic mass, whereas the younger brother had a thin pituitary gland. Funduscopy in the older sib revealed bilateral inferior segmental optic disc hypoplasia with an inferior double-ring sign, and optical coherence measurements showed thinning of the optic nerve fibers; no ophthalmologic features were reported for the younger brother. Both brothers were tall, with height above the 90th percentile. Dysmorphic features included macrocephaly, long face, midface hypoplasia, hypertelorism, downslanting palpebral fissures, broad nasal ridge and bridge, low-set posteriorly rotated and cupped ears, and dental anomalies, including dental crowding and single central incisor. Echocardiography showed severe dilated cardiomyopathy with prominent involvement of the right ventricle in both sibs. The younger brother died after cardiac transplantation at age 18 years; postmortem cardiac examination showed nonspecific ischemic cardiomyopathy, normal valves, normal coronary arteries, and multiple fibrotic scars in the left ventricle and septum.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022