NM_000110.4(DPYD):c.1518del (p.Lys505_Tyr506insTer) AND Dihydropyrimidine dehydrogenase deficiency

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Mar 3, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000409377.2

Allele description [Variation Report for NM_000110.4(DPYD):c.1518del (p.Lys505_Tyr506insTer)]

NM_000110.4(DPYD):c.1518del (p.Lys505_Tyr506insTer)

Gene:

DPYD:dihydropyrimidine dehydrogenase [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

1p21.3

Genomic location:

Preferred name:

NM_000110.4(DPYD):c.1518del (p.Lys505_Tyr506insTer)

HGVS:

NC_000001.11:g.97549566del
NG_008807.2:g.376494del
NM_000110.4:c.1518delMANE SELECT
NP_000101.2:p.Lys505_Tyr506insTer
LRG_722:g.376494del
NC_000001.10:g.98015122del
NM_000110.3:c.1518delC

Links:

dbSNP: rs1057516615

NCBI 1000 Genomes Browser:

rs1057516615

Molecular consequence:

NM_000110.4:c.1518del - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:: Dihydropyrimidine dehydrogenase deficiency (DPYDD)
Synonyms:: DPYD DEFICIENCY; DPD deficiency; Pyrimidinemia familial; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0010130; MedGen: C1959620; Orphanet: 1675; OMIM: 274270

Recent activity

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dual specificity mitogen-activated protein kinase kinase 1 isoform 1 [Mus muscul...
dual specificity mitogen-activated protein kinase kinase 1 isoform 1 [Mus musculus]
gi|6678794|ref|NP_032953.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000485949	Counsyl	criteria provided, single submitter (Counsyl Autosomal and X-linked Recessive Disease Classification criteria (2015))	Likely pathogenic (Mar 3, 2016)	unknown	clinical testing	mdi-5618_320494_Counsyl Autosomal and X-linked Recessive Disease Classification criteria (2015).pdf Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000485949

Counsyl

criteria provided, single submitter

(Counsyl Autosomal and X-linked Recessive Disease Classification criteria (2015))

Likely pathogenic
(Mar 3, 2016)

unknown

clinical testing

mdi-5618_320494_Counsyl Autosomal and X-linked Recessive Disease Classification criteria (2015).pdf

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Counsyl, SCV000485949.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 4, 2023

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