NM_003238.6(TGFB2):c.-45del AND Loeys-Dietz syndrome

Germline classification:: Likely benign (1 submission)
Last evaluated:: Jun 14, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000405291.5

Allele description [Variation Report for NM_003238.6(TGFB2):c.-45del]

NM_003238.6(TGFB2):c.-45del

Gene:

TGFB2:transforming growth factor beta 2 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

1q41

Genomic location:

Preferred name:

NM_003238.6(TGFB2):c.-45del

HGVS:

NC_000001.11:g.218346657del
NG_027721.2:g.6324del
NM_001135599.4:c.-45del
NM_003238.6:c.-45delMANE SELECT
NC_000001.10:g.218519999del
NM_001135599.2:c.-45delT
NR_138148.2:n.1322del
NR_138149.2:n.1322del

Links:

dbSNP: rs200186989

NCBI 1000 Genomes Browser:

rs200186989

Molecular consequence:

NM_001135599.4:c.-45del - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_003238.6:c.-45del - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NR_138148.2:n.1322del - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_138149.2:n.1322del - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: Loeys-Dietz syndrome (LDS)
Identifiers:: MONDO: MONDO:0018954; MedGen: C2697932; OMIM: PS609192

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000354231	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification 20161018)	Likely benign (Jun 14, 2016)	germline	clinical testing	ICSL_Variant_Classification_20161018.pdf Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000354231

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification 20161018)

Likely benign
(Jun 14, 2016)

germline

clinical testing

ICSL_Variant_Classification_20161018.pdf

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000354231.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Apr 9, 2023

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