NM_004273.5(CHST3):c.*3445G>A AND Skeletal dysplasia

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jun 14, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000395460.5

Allele description [Variation Report for NM_004273.5(CHST3):c.*3445G>A]

NM_004273.5(CHST3):c.*3445G>A

Gene:

CHST3:carbohydrate sulfotransferase 3 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

10q22.1

Genomic location:

Preferred name:

NM_004273.5(CHST3):c.*3445G>A

HGVS:

NC_000010.11:g.72011916G>A
NG_012635.1:g.52555G>A
NM_004273.5:c.*3445G>AMANE SELECT
NC_000010.10:g.73771674G>A
NM_004273.4:c.*3445G>A

Links:

dbSNP: rs185581202

NCBI 1000 Genomes Browser:

rs185581202

Molecular consequence:

NM_004273.5:c.*3445G>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]

Condition(s)

Name:: Skeletal dysplasia
Synonyms:: Primary bone dysplasia
Identifiers:: MONDO: MONDO:0018230; MedGen: C0410528; Human Phenotype Ontology: HP:0002652

Recent activity

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hypothetical protein, partial [Xenopus laevis]
hypothetical protein, partial [Xenopus laevis]
gi|315191810|gb|ADT90347.1|

Protein
serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 8 [Homo sapi...
serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 8 [Homo sapiens]
gi|1204934582|ref|NP_001339305.1|

Protein
Homo sapiens myosin 6 (MYH6) gene, MYH6-c.5111C>T allele, partial cds
Homo sapiens myosin 6 (MYH6) gene, MYH6-c.5111C>T allele, partial cds
gi|1043113185|gb|KU508434.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000364662	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification 20161018)	Uncertain significance (Jun 14, 2016)	germline	clinical testing	ICSL_Variant_Classification_20161018.pdf Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000364662

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification 20161018)

Uncertain significance
(Jun 14, 2016)

germline

clinical testing

ICSL_Variant_Classification_20161018.pdf

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000364662.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 24, 2023

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