NM_015087.5(SPART):c.*2127_*2130del AND Troyer syndrome

NM_015087.5(SPART):c.2127_2130del AND Troyer syndrome

Germline classification:: Likely benign (1 submission)
Last evaluated:: Jun 14, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000348114.5

Allele description [Variation Report for NM_015087.5(SPART):c.2127_2130del]

NM_015087.5(SPART):c.2127_2130del

Gene:

SPART:spartin [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

13q13.3

Genomic location:

Preferred name:

NM_015087.5(SPART):c.*2127_*2130del

HGVS:

NC_000013.11:g.36302238_36302241del
NG_011559.2:g.72943_72946del
NM_001142294.2:c.*2127_*2130del
NM_001142295.2:c.*2127_*2130del
NM_001142296.2:c.*2127_*2130del
NM_015087.5:c.*2127_*2130delMANE SELECT
NC_000013.10:g.36876375_36876378del
NM_015087.4:c.*2127_*2130delGATA

Links:

dbSNP: rs150662490

NCBI 1000 Genomes Browser:

rs150662490

Molecular consequence:

NM_001142294.2:c.*2127_*2130del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001142295.2:c.*2127_*2130del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001142296.2:c.*2127_*2130del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_015087.5:c.*2127_*2130del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]

Condition(s)

Name:: Troyer syndrome (SPG20)
Synonyms:: Spastic paraplegia 20; Spastic paraparesis childhood-onset with distal muscle wasting; Spastic paraplegia autosomal recessive Troyer type; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0010156; MedGen: C0393559; Orphanet: 101000; OMIM: 275900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000383925	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification 20161018)	Likely benign (Jun 14, 2016)	germline	clinical testing	ICSL_Variant_Classification_20161018.pdf Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000383925

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification 20161018)

Likely benign
(Jun 14, 2016)

germline

clinical testing

ICSL_Variant_Classification_20161018.pdf

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000383925.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Jun 9, 2024

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