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NM_004004.6(GJB2):c.167del (p.Leu56fs) AND GJB2-related disorder

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 16, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000346888.13

Allele description [Variation Report for NM_004004.6(GJB2):c.167del (p.Leu56fs)]

NM_004004.6(GJB2):c.167del (p.Leu56fs)

Gene:
GJB2:gap junction protein beta 2 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
13q12.11
Genomic location:
Preferred name:
NM_004004.6(GJB2):c.167del (p.Leu56fs)
Other names:
NM_004004.5(GJB2):c.167delT(p.Leu56Argfs); NM_004004.5(GJB2):c.167delT
HGVS:
  • NC_000013.11:g.20189415_20189415delA
  • NC_000013.11:g.20189415del
  • NG_008358.1:g.8561del
  • NM_004004.6:c.167delMANE SELECT
  • NP_003995.2:p.Leu56fs
  • LRG_1350t1:c.167del
  • LRG_1350:g.8561del
  • LRG_1350p1:p.Leu56fs
  • NC_000013.10:g.20763554del
  • NC_000013.10:g.20763554delA
  • NC_000013.11:g.20189415_20189415delA
  • NC_000013.11:g.20189415delA
  • NM_004004.5:c.167delT
  • NM_004004.6:c.167delTMANE SELECT
  • c.167delT
  • c.167delT (p.Leu56Argfs*26)
  • p.Leu56Argfs*26
  • p.Leu56ArgfsX26
  • p.Leu56fs
Protein change:
L56fs
Links:
OMIM: 121011.0010; dbSNP: rs80338942
NCBI 1000 Genomes Browser:
rs80338942
Molecular consequence:
  • NM_004004.6:c.167del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
GJB2-related disorder
Synonyms:
GJB2-Related Disorders; GJB2-related condition
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000383032Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification Criteria 09 May 2019)
Pathogenic
(May 16, 2018)
germlineclinical testing

PubMed (6)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Prevalence of GJB2 (connexin-26) and GJB6 (connexin-30) mutations in a cohort of 300 Brazilian hearing-impaired individuals: implications for diagnosis and genetic counseling.

Batissoco AC, Abreu-Silva RS, Braga MC, Lezirovitz K, Della-Rosa V, Alfredo T Jr, Otto PA, Mingroni-Netto RC.

Ear Hear. 2009 Feb;30(1):1-7. doi: 10.1097/AUD.0b013e31819144ad.

PubMed [citation]
PMID:
19125024

Spectrum and frequency of GJB2 mutations causing deafness in the northwest of Iran.

Bonyadi MJ, Fotouhi N, Esmaeili M.

Int J Pediatr Otorhinolaryngol. 2014 Apr;78(4):637-40. doi: 10.1016/j.ijporl.2014.01.022. Epub 2014 Jan 27.

PubMed [citation]
PMID:
24529908
See all PubMed Citations (6)

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000383032.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (6)

Description

The GJB2 c.167delT (p.Leu56ArgfsTer26) variant results in a frameshift and is predicted to result in premature truncation of the protein. The p.Leu56ArgfsTer26 variant is a well-known variant that is common in the Ashkenazi Jewish population, where the carrier rate is as high as 7.5% (Lerer et al. 2000). Across a selection of the available literature, the p.Leu56ArgfsTer26 variant has been identified in a total of 34 patients with autosomal recessive nonsyndromic hearing loss, including in 16 in a homozygous state, in 15 in a compound heterozygous state, and in three in a heterozygous state (Zelante et al. 1997; Morell et al. 1998; Lerer et al. 2000; Batissoco et al. 2009; Bonyadi et al. 2014; Amorini et al. 2015). The p.Leu56ArgfsTer26 variant was shown to segregate with disease in at least one family. Patients with this variant show a spectrum of phenotypic manifestation from mild to profound hearing loss, even among affected family members (Morell et al. 1998). Control data is unavailable for this variant, which is reported at a frequency of 0.00145 in the European-American population of the Exome Sequencing Project (Morell et al. 1998; Lerer et al. 2000). Based on the collective evidence and the potential impact of frameshift variants, the p.Leu56ArgfsTer26 variant is classified as pathogenic for GJB2-related disorders. This variant was observed by ICSL as part of a predisposition screen in an ostensibly healthy population.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024