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NM_175914.5(HNF4A):c.350C>T (p.Thr117Ile) AND Maturity-onset diabetes of the young type 1

Germline classification:
Likely benign (1 submission)
Last evaluated:
Apr 27, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000337755.8

Allele description [Variation Report for NM_175914.5(HNF4A):c.350C>T (p.Thr117Ile)]

NM_175914.5(HNF4A):c.350C>T (p.Thr117Ile)

Gene:
HNF4A:hepatocyte nuclear factor 4 alpha [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
20q13.12
Genomic location:
Preferred name:
NM_175914.5(HNF4A):c.350C>T (p.Thr117Ile)
Other names:
p.T139I:ACT>ATT
HGVS:
  • NC_000020.11:g.44413724C>T
  • NG_009818.1:g.62924C>T
  • NM_000457.6:c.416C>T
  • NM_001030003.3:c.350C>T
  • NM_001030004.3:c.350C>T
  • NM_001258355.2:c.395C>T
  • NM_001287182.2:c.341C>T
  • NM_001287183.2:c.341C>T
  • NM_001287184.2:c.341C>T
  • NM_175914.5:c.350C>TMANE SELECT
  • NM_178849.3:c.416C>T
  • NM_178850.3:c.416C>T
  • NP_000448.3:p.Thr139Ile
  • NP_000448.3:p.Thr139Ile
  • NP_001025174.1:p.Thr117Ile
  • NP_001025175.1:p.Thr117Ile
  • NP_001245284.1:p.Thr132Ile
  • NP_001274111.1:p.Thr114Ile
  • NP_001274112.1:p.Thr114Ile
  • NP_001274112.1:p.Thr114Ile
  • NP_001274113.1:p.Thr114Ile
  • NP_787110.2:p.Thr117Ile
  • NP_787110.2:p.Thr117Ile
  • NP_849180.1:p.Thr139Ile
  • NP_849181.1:p.Thr139Ile
  • LRG_483t1:c.350C>T
  • LRG_483t2:c.416C>T
  • LRG_483t3:c.341C>T
  • LRG_483:g.62924C>T
  • LRG_483p1:p.Thr117Ile
  • LRG_483p2:p.Thr139Ile
  • LRG_483p3:p.Thr114Ile
  • NC_000020.10:g.43042364C>T
  • NM_000457.3:c.416C>T
  • NM_000457.4:c.416C>T
  • NM_001258355.1:c.395C>T
  • NM_001287183.1:c.341C>T
  • NM_175914.3:c.350C>T
  • NM_175914.4:c.350C>T
  • P41235:p.Thr139Ile
Protein change:
T114I
Links:
UniProtKB: P41235#VAR_004669; dbSNP: rs1800961
NCBI 1000 Genomes Browser:
rs1800961
Molecular consequence:
  • NM_000457.6:c.416C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001030003.3:c.350C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001030004.3:c.350C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001258355.2:c.395C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001287182.2:c.341C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001287183.2:c.341C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001287184.2:c.341C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_175914.5:c.350C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_178849.3:c.416C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_178850.3:c.416C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Maturity-onset diabetes of the young type 1
Synonyms:
MILD JUVENILE DIABETES MELLITUS; MODY type 1; Diabetes mellitus MODY type 1; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007452; MedGen: C1852093; Orphanet: 552; OMIM: 125850

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000433893Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification Criteria 13 December 2019)		Likely benign
(Apr 27, 2017) 		germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Novel genetic variations and haplotypes of hepatocyte nuclear factor 4alpha (HNF4A) found in Japanese type II diabetic patients.

Fukushima-Uesaka H, Saito Y, Maekawa K, Saeki M, Kamatani N, Kajio H, Kuzuya N, Yasuda K, Sawada J.

Drug Metab Pharmacokinet. 2006 Aug;21(4):337-46.

PubMed [citation]
PMID:
16946562

Mutations in the hepatocyte nuclear factor-4alpha gene in Japanese with non-insulin-dependent diabetes: a nucleotide substitution in the polypyrimidine tract of intron 1b.

Sakurai K, Seki N, Fujii R, Yagui K, Tokuyama Y, Shimada F, Makino H, Suzuki Y, Hashimoto N, Saito Y, Egashira T, Matsui K, Kanatsuka A.

Horm Metab Res. 2000 Aug;32(8):316-20.

PubMed [citation]
PMID:
10983627

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000433893.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)

Description

This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). Publications were found based on this search. The evidence from the literature, in combination with allele frequency data from public databases where available, was sufficient to determine this variant is unlikely to cause disease. Therefore, this variant is classified as likely benign.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024