NM_000059.4(BRCA2):c.3515C>T (p.Ser1172Leu) AND Fanconi anemia complementation group D1

Germline classification:: Likely benign (1 submission)
Last evaluated:: Apr 28, 2017
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000303693.13

Allele description [Variation Report for NM_000059.4(BRCA2):c.3515C>T (p.Ser1172Leu)]

NM_000059.4(BRCA2):c.3515C>T (p.Ser1172Leu)

Gene:

BRCA2:BRCA2 DNA repair associated [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

13q13.1

Genomic location:

Preferred name:

NM_000059.4(BRCA2):c.3515C>T (p.Ser1172Leu)

Other names:

p.S1172L:TCG>TTG

HGVS:

NC_000013.11:g.32337870C>T
NG_012772.3:g.27391C>T
NM_000059.4:c.3515C>TMANE SELECT
NP_000050.2:p.Ser1172Leu
NP_000050.3:p.Ser1172Leu
LRG_293t1:c.3515C>T
LRG_293:g.27391C>T
LRG_293p1:p.Ser1172Leu
NC_000013.10:g.32912007C>T
NM_000059.3:c.3515C>T
U43746.1:n.3743C>T
p.S1172L

Nucleotide change:

3743C>T

Protein change:

S1172L

Links:

dbSNP: rs80358600

NCBI 1000 Genomes Browser:

rs80358600

Molecular consequence:

NM_000059.4:c.3515C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Fanconi anemia complementation group D1
Identifiers:: MONDO: MONDO:0011584; MedGen: C1838457; OMIM: 605724

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ND3 [Pseudochauhanea macrorchis]
ND3 [Pseudochauhanea macrorchis]
Gene ID:11816481

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000383684	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification Criteria 13 December 2019)	Likely benign (Apr 28, 2017)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000383684

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification Criteria 13 December 2019)

Likely benign
(Apr 28, 2017)

germline

clinical testing

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000383684.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases allowed determination this variant is unlikely to cause disease. Therefore, this variant is classified as likely benign.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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